Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08700

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
1,635,085	-		LU632_RS08695	0.47	-0.7
1,635,089	+		LU632_RS08695	0.48	-1.9
1,635,090	-		LU632_RS08695	0.48	-0.6
1,635,090	-		LU632_RS08695	0.48	-0.1
1,635,090	-		LU632_RS08695	0.48	+1.3
1,635,090	-		LU632_RS08695	0.48	-0.0
1,635,183	+		LU632_RS08695	0.55	+1.7
1,635,183	+		LU632_RS08695	0.55	+0.8
1,635,395	-		LU632_RS08695	0.72	+0.1
1,635,395	-		LU632_RS08695	0.72	+1.0
1,635,395	-		LU632_RS08695	0.72	-1.8
1,635,410	-		LU632_RS08695	0.74	-0.2
1,635,480	+		LU632_RS08695	0.79	+0.8
1,635,656	+				+0.1
1,635,656	+				+0.9
1,635,657	-				+1.2
1,635,661	-				-0.5
1,635,661	-				-0.4
1,635,784	+				+1.2
1,635,798	+				+1.5
1,635,831	+				-1.1
1,635,854	+				+0.3
1,635,854	+				+0.8
1,635,858	+				-1.3
1,635,894	+				-0.9
1,636,123	-		LU632_RS08700	0.17	+0.0
1,636,175	+		LU632_RS08700	0.22	-1.1
1,636,272	+		LU632_RS08700	0.33	+1.0
1,636,273	-		LU632_RS08700	0.33	+2.7
1,636,273	-		LU632_RS08700	0.33	-0.7
1,636,321	-		LU632_RS08700	0.38	+5.4
1,636,321	-		LU632_RS08700	0.38	+1.6
1,636,333	-		LU632_RS08700	0.39	+2.1
1,636,373	+		LU632_RS08700	0.43	-0.8
1,636,374	-		LU632_RS08700	0.43	+1.2
1,636,379	-		LU632_RS08700	0.44	+0.9
1,636,433	+		LU632_RS08700	0.49	+0.9
1,636,437	+		LU632_RS08700	0.50	+2.9
1,636,592	+		LU632_RS08700	0.66	+0.9
1,636,592	+		LU632_RS08700	0.66	+0.8
1,636,593	-		LU632_RS08700	0.66	-0.5
1,636,593	-		LU632_RS08700	0.66	+2.3
1,636,596	+		LU632_RS08700	0.66	+1.3
1,636,600	-		LU632_RS08700	0.67	-0.3
1,636,697	+		LU632_RS08700	0.77	-1.0
1,636,824	-				+0.9
1,636,868	+				+0.8
1,636,881	-				+0.1
1,636,886	+				+7.2
1,636,938	+				-0.3
1,636,938	+				-1.8
1,636,938	+				+0.3
1,636,938	+				+0.4
1,636,939	-				+1.3
1,636,939	-				-2.1
1,636,956	+				+0.4
1,636,973	+				-1.2
1,636,974	-				+1.4
1,637,102	-				+0.3
1,637,147	+	yegD	LU632_RS08705	0.10	+0.3
1,637,148	-	yegD	LU632_RS08705	0.11	-1.9
1,637,148	-	yegD	LU632_RS08705	0.11	+0.2
1,637,148	-	yegD	LU632_RS08705	0.11	+2.1
1,637,148	-	yegD	LU632_RS08705	0.11	+3.5
1,637,251	+	yegD	LU632_RS08705	0.18	-1.6
1,637,252	-	yegD	LU632_RS08705	0.18	+0.9
1,637,252	-	yegD	LU632_RS08705	0.18	-0.1
1,637,252	-	yegD	LU632_RS08705	0.18	-2.4
1,637,252	-	yegD	LU632_RS08705	0.18	-0.2
1,637,253	+	yegD	LU632_RS08705	0.18	+0.8
1,637,253	+	yegD	LU632_RS08705	0.18	+1.4
1,637,253	+	yegD	LU632_RS08705	0.18	-1.0
1,637,254	-	yegD	LU632_RS08705	0.18	+0.1
1,637,355	-	yegD	LU632_RS08705	0.26	+0.8
1,637,355	-	yegD	LU632_RS08705	0.26	+0.2
1,637,456	+	yegD	LU632_RS08705	0.33	+0.6
1,637,456	+	yegD	LU632_RS08705	0.33	+3.8
1,637,586	+	yegD	LU632_RS08705	0.43	+0.3
1,637,586	+	yegD	LU632_RS08705	0.43	+1.1
1,637,586	+	yegD	LU632_RS08705	0.43	+2.5
1,637,586	+	yegD	LU632_RS08705	0.43	+0.2
1,637,587	-	yegD	LU632_RS08705	0.43	-2.2
1,637,587	-	yegD	LU632_RS08705	0.43	-1.8
1,637,590	-	yegD	LU632_RS08705	0.43	-0.6
1,637,623	-	yegD	LU632_RS08705	0.46	+0.2