Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08265

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
1,554,351	-	ppk1	LU632_RS08260	0.59	+2.9
1,554,372	+	ppk1	LU632_RS08260	0.60	-3.4
1,554,526	+	ppk1	LU632_RS08260	0.68	+0.7
1,554,718	-	ppk1	LU632_RS08260	0.77	-0.3
1,554,728	-	ppk1	LU632_RS08260	0.77	-0.7
1,554,728	-	ppk1	LU632_RS08260	0.77	-2.3
1,554,733	+	ppk1	LU632_RS08260	0.78	-1.4
1,554,733	+	ppk1	LU632_RS08260	0.78	-1.8
1,554,734	-	ppk1	LU632_RS08260	0.78	-1.8
1,554,734	-	ppk1	LU632_RS08260	0.78	-2.7
1,554,773	+	ppk1	LU632_RS08260	0.80	+0.6
1,554,774	-	ppk1	LU632_RS08260	0.80	-0.3
1,554,801	+	ppk1	LU632_RS08260	0.81	+0.7
1,554,801	+	ppk1	LU632_RS08260	0.81	-3.9
1,554,802	-	ppk1	LU632_RS08260	0.81	-1.1
1,554,802	-	ppk1	LU632_RS08260	0.81	-2.7
1,554,802	-	ppk1	LU632_RS08260	0.81	+0.2
1,554,813	-	ppk1	LU632_RS08260	0.82	-0.7
1,555,046	-				-2.2
1,555,069	+				-2.3
1,555,174	+				-2.8
1,555,258	+				-0.5
1,555,259	-				+1.3
1,555,259	-				+3.2
1,555,264	-				+0.7
1,555,415	+		LU632_RS08265	0.43	-1.9
1,555,415	+		LU632_RS08265	0.43	+1.0
1,555,417	+		LU632_RS08265	0.45	-0.7
1,555,417	+		LU632_RS08265	0.45	+0.3
1,555,418	-		LU632_RS08265	0.45	+2.0
1,555,418	-		LU632_RS08265	0.45	+2.2
1,555,418	-		LU632_RS08265	0.45	+0.4
1,555,431	-		LU632_RS08265	0.54	-0.8
1,555,543	+				+0.9
1,555,544	-				-2.0
1,555,652	+	purN	LU632_RS08270	0.15	-4.4
1,555,665	+	purN	LU632_RS08270	0.17	+2.4
1,555,714	+	purN	LU632_RS08270	0.24	-0.5
1,555,715	-	purN	LU632_RS08270	0.24	+0.2
1,555,930	+	purN	LU632_RS08270	0.58	-0.8
1,555,930	+	purN	LU632_RS08270	0.58	-1.2
1,555,931	-	purN	LU632_RS08270	0.58	+0.5
1,555,931	-	purN	LU632_RS08270	0.58	-3.7
1,555,933	-	purN	LU632_RS08270	0.59	+1.7
1,555,933	-	purN	LU632_RS08270	0.59	-1.5
1,555,962	+	purN	LU632_RS08270	0.63	-0.4
1,555,962	+	purN	LU632_RS08270	0.63	-0.5
1,555,963	-	purN	LU632_RS08270	0.63	-0.7
1,555,983	-	purN	LU632_RS08270	0.66	-0.8
1,556,278	+				-5.4
1,556,279	-				-2.3
1,556,432	-	purM	LU632_RS08275	0.23	-2.5