Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07780

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
1,449,439	-	aroC	LU632_RS07775	0.15	-4.2
1,449,439	-	aroC	LU632_RS07775	0.15	+0.8
1,449,439	-	aroC	LU632_RS07775	0.15	-3.5
1,449,504	-	aroC	LU632_RS07775	0.21	+0.4
1,449,559	-	aroC	LU632_RS07775	0.26	-3.1
1,449,618	+	aroC	LU632_RS07775	0.31	-2.2
1,449,619	-	aroC	LU632_RS07775	0.32	+0.4
1,449,619	-	aroC	LU632_RS07775	0.32	-2.3
1,449,619	-	aroC	LU632_RS07775	0.32	-2.6
1,449,619	-	aroC	LU632_RS07775	0.32	+1.8
1,450,157	+	aroC	LU632_RS07775	0.81	-2.3
1,450,306	+				-0.4
1,450,307	-				-2.0
1,450,307	-				-0.4
1,450,406	+				+0.9
1,450,409	+				+1.3
1,450,410	-				-0.8
1,450,410	-				-0.9
1,450,410	-				-0.1
1,450,410	-				-2.2
1,450,504	-	mepA	LU632_RS07780	0.16	-0.0
1,450,507	-	mepA	LU632_RS07780	0.17	+1.7
1,450,576	+	mepA	LU632_RS07780	0.25	+0.1
1,450,595	+	mepA	LU632_RS07780	0.28	-2.1
1,450,596	-	mepA	LU632_RS07780	0.28	-1.4
1,450,602	+	mepA	LU632_RS07780	0.29	-0.3
1,450,627	+	mepA	LU632_RS07780	0.32	+0.2
1,450,628	-	mepA	LU632_RS07780	0.32	+0.2
1,450,628	-	mepA	LU632_RS07780	0.32	+0.1
1,450,628	-	mepA	LU632_RS07780	0.32	-1.3
1,450,629	+	mepA	LU632_RS07780	0.32	+0.2
1,450,629	+	mepA	LU632_RS07780	0.32	+2.4
1,450,629	+	mepA	LU632_RS07780	0.32	-1.5
1,450,629	+	mepA	LU632_RS07780	0.32	+0.1
1,450,629	+	mepA	LU632_RS07780	0.32	+4.3
1,450,630	-	mepA	LU632_RS07780	0.32	-0.4
1,450,731	+	mepA	LU632_RS07780	0.45	+0.3
1,450,794	+	mepA	LU632_RS07780	0.52	+1.2
1,450,794	+	mepA	LU632_RS07780	0.52	+1.4
1,450,795	-	mepA	LU632_RS07780	0.53	-0.8
1,450,885	+	mepA	LU632_RS07780	0.64	-1.5
1,450,999	+	mepA	LU632_RS07780	0.78	+1.8
1,451,000	-	mepA	LU632_RS07780	0.78	-0.7
1,451,000	-	mepA	LU632_RS07780	0.78	+0.9
1,451,000	-	mepA	LU632_RS07780	0.78	+1.3
1,451,000	-	mepA	LU632_RS07780	0.78	-1.7
1,451,154	+				-1.2
1,451,206	+				+2.9
1,451,207	-				+0.4
1,451,263	+				+3.0
1,451,367	-		LU632_RS07785	0.20	-1.3
1,451,406	+		LU632_RS07785	0.25	-1.1
1,451,454	-		LU632_RS07785	0.31	+1.4
1,451,470	+		LU632_RS07785	0.33	+2.4
1,451,471	-		LU632_RS07785	0.33	+1.8
1,451,530	+		LU632_RS07785	0.40	-0.6
1,451,658	+		LU632_RS07785	0.56	+0.1
1,451,724	+		LU632_RS07785	0.64	+0.1
1,451,724	+		LU632_RS07785	0.64	+0.8
1,451,725	-		LU632_RS07785	0.64	-2.5
1,451,798	+		LU632_RS07785	0.73	+0.8
1,451,837	+		LU632_RS07785	0.78	-2.6
1,451,880	-		LU632_RS07785	0.84	+0.4
1,451,880	-		LU632_RS07785	0.84	+1.4
1,451,905	+		LU632_RS07785	0.87	+2.4
1,451,906	-		LU632_RS07785	0.87	-0.5
1,451,906	-		LU632_RS07785	0.87	-2.7
1,451,967	+				+2.6
1,451,967	+				-0.6
1,451,967	+				+1.2
1,451,968	-				-2.3
1,451,968	-				+0.9
1,451,968	-				+1.2
1,452,140	-		LU632_RS07790	0.15	-1.0