Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05085

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05080 and LU632_RS05085 are separated by 103 nucleotidesLU632_RS05085 and LU632_RS05090 are separated by 143 nucleotidesLU632_RS05090 and LU632_RS05095 are separated by 2 nucleotides LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280 _RS05080 LU632_RS05085: LU632_RS05085 - GNAT family N-acetyltransferase, at 990,384 to 990,761 _RS05085 LU632_RS05090: LU632_RS05090 - contact-dependent growth inhibition system immunity protein, at 990,905 to 991,225 _RS05090 LU632_RS05095: LU632_RS05095 - hypothetical protein, at 991,228 to 992,061 _RS05095 Position (kb) 990 991Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 990.441 kb on - strand, within LU632_RS05085at 990.624 kb on - strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.625 kb on + strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.626 kb on - strand, within LU632_RS05085at 990.702 kb on - strand, within LU632_RS05085at 990.738 kb on - strandat 990.738 kb on - strandat 990.744 kb on - strandat 990.747 kb on + strandat 990.748 kb on - strandat 990.748 kb on - strandat 990.748 kb on - strandat 990.748 kb on - strandat 990.749 kb on + strandat 990.755 kb on + strandat 990.916 kb on + strandat 990.917 kb on - strandat 990.922 kb on + strandat 991.011 kb on + strand, within LU632_RS05090at 991.011 kb on + strand, within LU632_RS05090at 991.011 kb on + strand, within LU632_RS05090at 991.012 kb on - strand, within LU632_RS05090at 991.014 kb on + strand, within LU632_RS05090at 991.015 kb on - strand, within LU632_RS05090at 991.025 kb on + strand, within LU632_RS05090at 991.113 kb on + strand, within LU632_RS05090at 991.113 kb on + strand, within LU632_RS05090at 991.114 kb on - strand, within LU632_RS05090at 991.117 kb on + strand, within LU632_RS05090at 991.117 kb on + strand, within LU632_RS05090at 991.117 kb on + strand, within LU632_RS05090at 991.118 kb on - strand, within LU632_RS05090at 991.118 kb on - strand, within LU632_RS05090at 991.122 kb on - strand, within LU632_RS05090at 991.122 kb on - strand, within LU632_RS05090at 991.135 kb on + strand, within LU632_RS05090at 991.225 kb on + strandat 991.225 kb on + strandat 991.229 kb on + strandat 991.229 kb on + strandat 991.230 kb on - strandat 991.255 kb on - strandat 991.255 kb on - strandat 991.257 kb on - strandat 991.257 kb on - strandat 991.257 kb on - strandat 991.307 kb on + strandat 991.407 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.437 kb on + strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.438 kb on - strand, within LU632_RS05095at 991.439 kb on + strand, within LU632_RS05095at 991.440 kb on - strand, within LU632_RS05095at 991.440 kb on - strand, within LU632_RS05095at 991.440 kb on - strand, within LU632_RS05095at 991.650 kb on + strand, within LU632_RS05095at 991.650 kb on + strand, within LU632_RS05095

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
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990,441 - LU632_RS05085 0.15 +2.6
990,624 - LU632_RS05085 0.63 +0.8
990,625 + LU632_RS05085 0.64 -1.3
990,625 + LU632_RS05085 0.64 +0.1
990,625 + LU632_RS05085 0.64 +1.5
990,625 + LU632_RS05085 0.64 +0.6
990,625 + LU632_RS05085 0.64 -1.2
990,626 - LU632_RS05085 0.64 -0.9
990,626 - LU632_RS05085 0.64 -1.2
990,626 - LU632_RS05085 0.64 -1.0
990,626 - LU632_RS05085 0.64 -0.7
990,626 - LU632_RS05085 0.64 -0.9
990,626 - LU632_RS05085 0.64 +2.9
990,626 - LU632_RS05085 0.64 -0.4
990,626 - LU632_RS05085 0.64 +0.3
990,626 - LU632_RS05085 0.64 +2.6
990,702 - LU632_RS05085 0.84 -0.8
990,738 - -0.4
990,738 - -1.0
990,744 - -2.1
990,747 + -1.7
990,748 - -0.4
990,748 - +2.5
990,748 - +0.7
990,748 - -0.4
990,749 + -0.3
990,755 + -2.6
990,916 + -1.0
990,917 - +0.6
990,922 + -3.0
991,011 + LU632_RS05090 0.33 -1.7
991,011 + LU632_RS05090 0.33 -0.9
991,011 + LU632_RS05090 0.33 -1.6
991,012 - LU632_RS05090 0.33 +0.5
991,014 + LU632_RS05090 0.34 -1.3
991,015 - LU632_RS05090 0.34 -1.6
991,025 + LU632_RS05090 0.37 -0.8
991,113 + LU632_RS05090 0.65 +1.4
991,113 + LU632_RS05090 0.65 -1.1
991,114 - LU632_RS05090 0.65 -0.4
991,117 + LU632_RS05090 0.66 -0.2
991,117 + LU632_RS05090 0.66 -0.9
991,117 + LU632_RS05090 0.66 -2.4
991,118 - LU632_RS05090 0.66 -1.0
991,118 - LU632_RS05090 0.66 -0.4
991,122 - LU632_RS05090 0.68 -0.2
991,122 - LU632_RS05090 0.68 -1.3
991,135 + LU632_RS05090 0.72 -0.9
991,225 + +0.1
991,225 + -0.7
991,229 + +1.0
991,229 + -1.9
991,230 - -1.3
991,255 - -1.7
991,255 - +0.1
991,257 - -1.8
991,257 - -0.4
991,257 - -1.3
991,307 + -1.5
991,407 + LU632_RS05095 0.21 +0.7
991,437 + LU632_RS05095 0.25 +1.2
991,437 + LU632_RS05095 0.25 -1.1
991,437 + LU632_RS05095 0.25 -1.7
991,437 + LU632_RS05095 0.25 +0.2
991,437 + LU632_RS05095 0.25 +0.4
991,438 - LU632_RS05095 0.25 -0.6
991,438 - LU632_RS05095 0.25 -1.4
991,438 - LU632_RS05095 0.25 -0.4
991,438 - LU632_RS05095 0.25 -1.8
991,439 + LU632_RS05095 0.25 +0.0
991,440 - LU632_RS05095 0.25 -1.2
991,440 - LU632_RS05095 0.25 +0.7
991,440 - LU632_RS05095 0.25 -0.5
991,650 + LU632_RS05095 0.51 +0.6
991,650 + LU632_RS05095 0.51 -1.4

Or see this region's nucleotide sequence