Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hcp and LU632_RS04800 are separated by 345 nucleotides LU632_RS04800 and LU632_RS04805 are separated by 142 nucleotides LU632_RS04805 and LU632_RS04810 are separated by 497 nucleotides LU632_RS04810 and LU632_RS04815 are separated by 31 nucleotides
LU632_RS04795: hcp - type VI secretion system tube protein Hcp, at 940,810 to 941,301
hcp
LU632_RS04800: LU632_RS04800 - hypothetical protein, at 941,647 to 941,796
_RS04800
LU632_RS04805: LU632_RS04805 - hypothetical protein, at 941,939 to 942,214
_RS04805
LU632_RS04810: LU632_RS04810 - hypothetical protein, at 942,712 to 942,975
_RS04810
LU632_RS04815: LU632_RS04815 - IS1 family transposase, at 943,007 to 943,111
_RS04815
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 941.351 kb on + strand at 941.379 kb on - strand at 941.435 kb on - strand at 941.511 kb on - strand at 941.515 kb on - strand at 941.659 kb on - strand at 941.664 kb on - strand, within LU632_RS04800 at 941.669 kb on + strand, within LU632_RS04800 at 941.670 kb on - strand, within LU632_RS04800 at 941.722 kb on + strand, within LU632_RS04800 at 941.799 kb on + strand at 941.800 kb on - strand at 941.880 kb on + strand at 941.953 kb on + strand at 942.000 kb on + strand, within LU632_RS04805 at 942.000 kb on + strand, within LU632_RS04805 at 942.027 kb on + strand, within LU632_RS04805 at 942.073 kb on - strand, within LU632_RS04805 at 942.130 kb on + strand, within LU632_RS04805 at 942.145 kb on - strand, within LU632_RS04805 at 942.194 kb on - strand at 942.912 kb on + strand, within LU632_RS04810 at 942.912 kb on + strand, within LU632_RS04810 at 943.094 kb on + strand, within LU632_RS04815 at 943.094 kb on + strand, within LU632_RS04815
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 941,351 + -0.9 941,379 - -0.4 941,435 - -0.4 941,511 - +2.3 941,515 - -2.0 941,659 - -0.4 941,664 - LU632_RS04800 0.11 -0.6 941,669 + LU632_RS04800 0.15 -0.4 941,670 - LU632_RS04800 0.15 -1.8 941,722 + LU632_RS04800 0.50 -0.5 941,799 + -2.0 941,800 - -3.4 941,880 + -2.2 941,953 + -2.8 942,000 + LU632_RS04805 0.22 +1.0 942,000 + LU632_RS04805 0.22 -1.0 942,027 + LU632_RS04805 0.32 +0.8 942,073 - LU632_RS04805 0.49 +4.7 942,130 + LU632_RS04805 0.69 +1.2 942,145 - LU632_RS04805 0.75 +1.2 942,194 - -1.8 942,912 + LU632_RS04810 0.76 -0.2 942,912 + LU632_RS04810 0.76 -2.2 943,094 + LU632_RS04815 0.83 +0.7 943,094 + LU632_RS04815 0.83 -0.2
Or see this region's nucleotide sequence