Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04265 and ulaD overlap by 4 nucleotides ulaD and LU632_RS04275 are separated by 2 nucleotides LU632_RS04275 and araD overlap by 4 nucleotides araD and LU632_RS04285 are separated by 89 nucleotides
LU632_RS04265: LU632_RS04265 - carbohydrate kinase, at 848,197 to 849,681
_RS04265
LU632_RS04270: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 849,678 to 850,340
ulaD
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895
araD
LU632_RS04285: LU632_RS04285 - IS5 family transposase, at 851,985 to 852,801
_RS04285
Position (kb) 850
851
852 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 849.379 kb on - strand, within LU632_RS04265 at 849.673 kb on - strand at 849.876 kb on - strand, within ulaD at 850.090 kb on - strand, within ulaD at 850.235 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.268 kb on + strand, within ulaD at 850.325 kb on + strand at 850.337 kb on - strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.365 kb on + strand at 850.365 kb on + strand at 850.366 kb on - strand at 850.366 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.455 kb on + strand, within LU632_RS04275 at 850.548 kb on + strand, within LU632_RS04275 at 850.592 kb on - strand, within LU632_RS04275 at 850.622 kb on + strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.703 kb on + strand, within LU632_RS04275 at 850.819 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.881 kb on + strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 851.256 kb on + strand at 851.256 kb on + strand at 851.257 kb on - strand at 851.257 kb on - strand at 851.341 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.365 kb on - strand, within araD at 851.365 kb on - strand, within araD at 851.399 kb on + strand, within araD at 851.485 kb on - strand, within araD at 851.485 kb on - strand, within araD at 851.621 kb on - strand, within araD at 851.626 kb on + strand, within araD at 851.627 kb on - strand, within araD at 851.627 kb on - strand, within araD at 851.647 kb on - strand, within araD at 851.648 kb on + strand, within araD at 851.649 kb on - strand, within araD at 851.649 kb on - strand, within araD at 851.670 kb on + strand, within araD at 851.730 kb on + strand, within araD at 851.762 kb on + strand, within araD at 851.763 kb on - strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.855 kb on - strand at 851.882 kb on - strand at 851.896 kb on + strand at 851.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 849,379 - LU632_RS04265 0.80 -1.1 849,673 - -1.4 849,876 - ulaD LU632_RS04270 0.30 -4.1 850,090 - ulaD LU632_RS04270 0.62 -1.4 850,235 - ulaD LU632_RS04270 0.84 -3.2 850,241 - ulaD LU632_RS04270 0.85 -2.3 850,241 - ulaD LU632_RS04270 0.85 -2.4 850,241 - ulaD LU632_RS04270 0.85 -3.2 850,268 + ulaD LU632_RS04270 0.89 -1.8 850,325 + -0.8 850,337 - -1.9 850,338 + -0.2 850,338 + -0.6 850,338 + -1.4 850,339 - -0.9 850,339 - -0.0 850,339 - -1.2 850,339 - -1.6 850,365 + -1.2 850,365 + +0.9 850,366 - -3.7 850,366 - -0.0 850,368 - -3.3 850,368 - -3.7 850,368 - -1.5 850,455 + LU632_RS04275 0.13 -1.1 850,548 + LU632_RS04275 0.24 +0.4 850,592 - LU632_RS04275 0.29 -0.6 850,622 + LU632_RS04275 0.33 -2.9 850,701 - LU632_RS04275 0.42 -1.5 850,701 - LU632_RS04275 0.42 -4.1 850,703 + LU632_RS04275 0.42 +0.2 850,819 + LU632_RS04275 0.55 -0.6 850,834 + LU632_RS04275 0.57 -3.7 850,834 + LU632_RS04275 0.57 -2.6 850,881 + LU632_RS04275 0.63 -2.7 850,882 - LU632_RS04275 0.63 -1.5 850,882 - LU632_RS04275 0.63 -4.7 851,256 + -1.8 851,256 + -0.6 851,257 - -2.4 851,257 - -5.2 851,341 + araD LU632_RS04280 0.21 -1.4 851,364 + araD LU632_RS04280 0.24 -0.4 851,364 + araD LU632_RS04280 0.24 +0.4 851,365 - araD LU632_RS04280 0.24 -3.9 851,365 - araD LU632_RS04280 0.24 -1.6 851,399 + araD LU632_RS04280 0.29 -1.3 851,485 - araD LU632_RS04280 0.41 +0.2 851,485 - araD LU632_RS04280 0.41 +0.4 851,621 - araD LU632_RS04280 0.61 +6.6 851,626 + araD LU632_RS04280 0.61 -0.9 851,627 - araD LU632_RS04280 0.62 -4.9 851,627 - araD LU632_RS04280 0.62 -1.6 851,647 - araD LU632_RS04280 0.64 -2.1 851,648 + araD LU632_RS04280 0.65 -0.8 851,649 - araD LU632_RS04280 0.65 -2.2 851,649 - araD LU632_RS04280 0.65 -2.0 851,670 + araD LU632_RS04280 0.68 +0.2 851,730 + araD LU632_RS04280 0.76 -2.2 851,762 + araD LU632_RS04280 0.81 -1.9 851,763 - araD LU632_RS04280 0.81 -3.6 851,782 + araD LU632_RS04280 0.84 -2.8 851,782 + araD LU632_RS04280 0.84 +1.5 851,782 + araD LU632_RS04280 0.84 -0.9 851,783 - araD LU632_RS04280 0.84 -2.8 851,783 - araD LU632_RS04280 0.84 -1.5 851,783 - araD LU632_RS04280 0.84 -3.2 851,783 - araD LU632_RS04280 0.84 -0.9 851,783 - araD LU632_RS04280 0.84 -1.9 851,855 - -0.9 851,882 - -1.6 851,896 + -0.4 851,899 + -0.4
Or see this region's nucleotide sequence