Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04245 and yiaK are separated by 316 nucleotides yiaK and LU632_RS04255 are separated by 13 nucleotides LU632_RS04255 and LU632_RS04260 are separated by 14 nucleotides
LU632_RS04245: LU632_RS04245 - SMP-30/gluconolactonase/LRE family protein, at 844,240 to 845,091
_RS04245
LU632_RS04250: yiaK - 3-dehydro-L-gulonate 2-dehydrogenase, at 845,408 to 846,406
yiaK
LU632_RS04255: LU632_RS04255 - YhcH/YjgK/YiaL family protein, at 846,420 to 846,887
_RS04255
LU632_RS04260: LU632_RS04260 - MFS transporter, at 846,902 to 848,200
_RS04260
Position (kb) 845
846
847 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 844.607 kb on - strand, within LU632_RS04245 at 844.611 kb on + strand, within LU632_RS04245 at 844.624 kb on - strand, within LU632_RS04245 at 844.718 kb on + strand, within LU632_RS04245 at 844.765 kb on + strand, within LU632_RS04245 at 844.765 kb on + strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.766 kb on - strand, within LU632_RS04245 at 844.777 kb on - strand, within LU632_RS04245 at 844.857 kb on + strand, within LU632_RS04245 at 844.929 kb on + strand, within LU632_RS04245 at 845.044 kb on + strand at 845.044 kb on + strand at 845.044 kb on + strand at 845.044 kb on + strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.045 kb on - strand at 845.076 kb on - strand at 845.089 kb on + strand at 845.090 kb on - strand at 845.115 kb on - strand at 845.115 kb on - strand at 845.186 kb on + strand at 845.186 kb on + strand at 845.267 kb on - strand at 845.454 kb on + strand at 845.563 kb on + strand, within yiaK at 845.564 kb on - strand, within yiaK at 845.699 kb on - strand, within yiaK at 845.923 kb on + strand, within yiaK at 846.021 kb on - strand, within yiaK at 846.097 kb on + strand, within yiaK at 846.130 kb on + strand, within yiaK at 846.434 kb on + strand at 846.489 kb on + strand, within LU632_RS04255 at 846.490 kb on - strand, within LU632_RS04255 at 846.636 kb on + strand, within LU632_RS04255 at 846.636 kb on + strand, within LU632_RS04255 at 846.821 kb on + strand, within LU632_RS04255 at 846.821 kb on + strand, within LU632_RS04255 at 846.901 kb on + strand at 846.901 kb on + strand at 846.902 kb on - strand at 846.913 kb on - strand at 846.985 kb on + strand at 846.995 kb on - strand at 847.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 844,607 - LU632_RS04245 0.43 -2.4 844,611 + LU632_RS04245 0.44 +1.2 844,624 - LU632_RS04245 0.45 -2.7 844,718 + LU632_RS04245 0.56 -0.4 844,765 + LU632_RS04245 0.62 -0.9 844,765 + LU632_RS04245 0.62 -1.8 844,766 - LU632_RS04245 0.62 -0.9 844,766 - LU632_RS04245 0.62 -0.2 844,766 - LU632_RS04245 0.62 -0.3 844,766 - LU632_RS04245 0.62 -1.3 844,766 - LU632_RS04245 0.62 -1.4 844,777 - LU632_RS04245 0.63 +0.8 844,857 + LU632_RS04245 0.72 -1.2 844,929 + LU632_RS04245 0.81 -0.4 845,044 + -0.2 845,044 + -0.1 845,044 + -0.3 845,044 + -0.8 845,045 - +0.1 845,045 - -2.1 845,045 - +0.1 845,045 - -1.1 845,045 - +0.4 845,076 - -0.3 845,089 + +0.2 845,090 - -0.6 845,115 - -0.2 845,115 - +1.6 845,186 + -2.6 845,186 + -1.9 845,267 - +0.3 845,454 + -3.2 845,563 + yiaK LU632_RS04250 0.16 -2.2 845,564 - yiaK LU632_RS04250 0.16 -2.6 845,699 - yiaK LU632_RS04250 0.29 -3.7 845,923 + yiaK LU632_RS04250 0.52 -3.0 846,021 - yiaK LU632_RS04250 0.61 +0.1 846,097 + yiaK LU632_RS04250 0.69 -1.8 846,130 + yiaK LU632_RS04250 0.72 -4.0 846,434 + -1.3 846,489 + LU632_RS04255 0.15 +0.1 846,490 - LU632_RS04255 0.15 -3.2 846,636 + LU632_RS04255 0.46 -2.9 846,636 + LU632_RS04255 0.46 -0.2 846,821 + LU632_RS04255 0.86 -1.3 846,821 + LU632_RS04255 0.86 +2.4 846,901 + -1.3 846,901 + -3.5 846,902 - -0.5 846,913 - -4.9 846,985 + +0.4 846,995 - -2.1 847,002 - -1.3
Or see this region's nucleotide sequence