Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04170 and katB are separated by 61 nucleotides katB and LU632_RS04180 are separated by 362 nucleotides LU632_RS04180 and LU632_RS04185 are separated by 350 nucleotides
LU632_RS04170: LU632_RS04170 - ankyrin repeat domain-containing protein, at 827,875 to 828,414
_RS04170
LU632_RS04175: katB - catalase, at 828,476 to 829,942
katB
LU632_RS04180: LU632_RS04180 - hypothetical protein, at 830,305 to 830,469
_RS04180
LU632_RS04185: LU632_RS04185 - transglycosylase SLT domain-containing protein, at 830,820 to 831,302
_RS04185
Position (kb) 828
829
830 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 827.503 kb on - strand at 827.541 kb on + strand at 827.556 kb on + strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.557 kb on - strand at 827.558 kb on + strand at 827.559 kb on - strand at 827.574 kb on + strand at 827.575 kb on - strand at 827.610 kb on - strand at 827.610 kb on - strand at 827.637 kb on + strand at 827.638 kb on - strand at 827.698 kb on + strand at 827.699 kb on - strand at 827.709 kb on - strand at 827.709 kb on - strand at 827.826 kb on + strand at 827.827 kb on - strand at 827.827 kb on - strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.829 kb on + strand at 827.830 kb on - strand at 827.830 kb on - strand at 827.834 kb on - strand at 827.834 kb on - strand at 827.845 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.847 kb on + strand at 827.848 kb on - strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.916 kb on + strand at 827.917 kb on - strand at 827.917 kb on - strand at 827.920 kb on - strand at 827.920 kb on - strand at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.002 kb on + strand, within LU632_RS04170 at 828.003 kb on - strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.245 kb on + strand, within LU632_RS04170 at 828.246 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.309 kb on - strand, within LU632_RS04170 at 828.312 kb on + strand, within LU632_RS04170 at 828.313 kb on - strand, within LU632_RS04170 at 828.389 kb on + strand at 828.390 kb on - strand at 828.467 kb on - strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.472 kb on + strand at 828.473 kb on - strand at 828.473 kb on - strand at 828.570 kb on + strand at 828.635 kb on - strand, within katB at 828.667 kb on - strand, within katB at 828.675 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.718 kb on + strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.719 kb on - strand, within katB at 828.805 kb on - strand, within katB at 828.886 kb on - strand, within katB at 828.931 kb on + strand, within katB at 828.968 kb on - strand, within katB at 828.968 kb on - strand, within katB at 829.079 kb on - strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.167 kb on + strand, within katB at 829.233 kb on + strand, within katB at 829.234 kb on - strand, within katB at 829.234 kb on - strand, within katB at 829.314 kb on + strand, within katB at 829.348 kb on - strand, within katB at 829.361 kb on - strand, within katB at 829.364 kb on - strand, within katB at 829.393 kb on + strand, within katB at 829.393 kb on + strand, within katB at 829.484 kb on - strand, within katB at 829.484 kb on - strand, within katB at 829.572 kb on - strand, within katB at 829.572 kb on - strand, within katB at 829.656 kb on - strand, within katB at 829.706 kb on + strand, within katB at 829.707 kb on - strand, within katB at 829.733 kb on - strand, within katB at 829.733 kb on - strand, within katB at 829.784 kb on + strand, within katB at 829.923 kb on - strand at 830.023 kb on + strand at 830.023 kb on + strand at 830.024 kb on - strand at 830.137 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.230 kb on + strand at 830.231 kb on - strand at 830.263 kb on + strand at 830.263 kb on + strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.264 kb on - strand at 830.282 kb on + strand at 830.283 kb on - strand at 830.348 kb on - strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.369 kb on + strand, within LU632_RS04180 at 830.372 kb on + strand, within LU632_RS04180 at 830.458 kb on - strand at 830.556 kb on - strand at 830.588 kb on + strand at 830.589 kb on - strand at 830.589 kb on - strand at 830.631 kb on + strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.632 kb on - strand at 830.654 kb on - strand at 830.727 kb on - strand at 830.730 kb on + strand at 830.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 827,503 - +0.8 827,541 + +3.9 827,556 + +2.4 827,557 - +0.1 827,557 - -1.8 827,557 - -1.8 827,558 + +1.7 827,559 - -1.6 827,574 + +1.7 827,575 - -1.9 827,610 - +0.4 827,610 - +1.5 827,637 + -3.0 827,638 - +1.2 827,698 + -0.6 827,699 - -1.1 827,709 - -1.2 827,709 - -1.0 827,826 + -1.0 827,827 - -2.9 827,827 - +1.2 827,829 + +2.8 827,829 + +0.3 827,829 + +0.1 827,830 - +1.0 827,830 - +0.2 827,834 - -0.3 827,834 - -1.7 827,845 + +0.6 827,847 + +0.1 827,847 + -0.4 827,847 + +2.7 827,847 + -1.6 827,848 - -1.7 827,916 + -0.4 827,916 + +0.6 827,916 + +1.7 827,917 - +1.6 827,917 - -0.1 827,920 - -0.3 827,920 - +2.6 828,002 + LU632_RS04170 0.24 -0.4 828,002 + LU632_RS04170 0.24 +0.7 828,002 + LU632_RS04170 0.24 -0.8 828,003 - LU632_RS04170 0.24 +3.2 828,245 + LU632_RS04170 0.69 +1.7 828,245 + LU632_RS04170 0.69 +0.1 828,245 + LU632_RS04170 0.69 +1.7 828,246 - LU632_RS04170 0.69 -0.2 828,309 - LU632_RS04170 0.80 +0.7 828,309 - LU632_RS04170 0.80 +0.1 828,312 + LU632_RS04170 0.81 +0.6 828,313 - LU632_RS04170 0.81 +0.4 828,389 + +0.6 828,390 - -2.4 828,467 - -4.4 828,472 + -1.2 828,472 + +0.0 828,472 + +1.0 828,473 - -1.5 828,473 - +0.5 828,570 + -0.8 828,635 - katB LU632_RS04175 0.11 +2.4 828,667 - katB LU632_RS04175 0.13 +0.8 828,675 + katB LU632_RS04175 0.14 +1.7 828,718 + katB LU632_RS04175 0.16 +0.8 828,718 + katB LU632_RS04175 0.16 +0.3 828,719 - katB LU632_RS04175 0.17 -2.1 828,719 - katB LU632_RS04175 0.17 +0.7 828,719 - katB LU632_RS04175 0.17 -2.0 828,805 - katB LU632_RS04175 0.22 -1.9 828,886 - katB LU632_RS04175 0.28 +1.8 828,931 + katB LU632_RS04175 0.31 +0.4 828,968 - katB LU632_RS04175 0.34 -1.6 828,968 - katB LU632_RS04175 0.34 +0.8 829,079 - katB LU632_RS04175 0.41 -2.8 829,167 + katB LU632_RS04175 0.47 +0.2 829,167 + katB LU632_RS04175 0.47 +0.5 829,167 + katB LU632_RS04175 0.47 +0.7 829,233 + katB LU632_RS04175 0.52 +0.6 829,234 - katB LU632_RS04175 0.52 +0.1 829,234 - katB LU632_RS04175 0.52 -2.3 829,314 + katB LU632_RS04175 0.57 -0.4 829,348 - katB LU632_RS04175 0.59 -0.2 829,361 - katB LU632_RS04175 0.60 -0.5 829,364 - katB LU632_RS04175 0.61 +0.3 829,393 + katB LU632_RS04175 0.63 -0.8 829,393 + katB LU632_RS04175 0.63 -1.8 829,484 - katB LU632_RS04175 0.69 +2.4 829,484 - katB LU632_RS04175 0.69 -2.8 829,572 - katB LU632_RS04175 0.75 +0.8 829,572 - katB LU632_RS04175 0.75 +0.5 829,656 - katB LU632_RS04175 0.80 +0.8 829,706 + katB LU632_RS04175 0.84 -0.4 829,707 - katB LU632_RS04175 0.84 -0.0 829,733 - katB LU632_RS04175 0.86 -1.9 829,733 - katB LU632_RS04175 0.86 -1.1 829,784 + katB LU632_RS04175 0.89 +1.0 829,923 - -2.1 830,023 + -1.7 830,023 + +2.3 830,024 - -1.8 830,137 + -1.7 830,230 + +1.8 830,230 + -1.1 830,230 + +1.0 830,231 - -2.4 830,263 + -1.1 830,263 + -1.6 830,264 - +0.7 830,264 - -0.4 830,264 - +0.5 830,282 + +0.4 830,283 - +1.3 830,348 - LU632_RS04180 0.26 -1.7 830,369 + LU632_RS04180 0.39 +0.8 830,369 + LU632_RS04180 0.39 -1.1 830,372 + LU632_RS04180 0.41 +0.5 830,458 - -1.6 830,556 - +1.2 830,588 + -2.1 830,589 - -0.3 830,589 - -0.9 830,631 + +0.1 830,632 - +0.5 830,632 - -0.7 830,632 - -0.1 830,654 - -0.2 830,727 - -1.4 830,730 + +1.0 830,734 - +2.2
Or see this region's nucleotide sequence