Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02270 and LU632_RS02275 are separated by 307 nucleotides LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides LU632_RS02280 and LU632_RS02285 overlap by 1 nucleotides LU632_RS02285 and LU632_RS02290 are separated by 2 nucleotides
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
LU632_RS02285: LU632_RS02285 - phage holin family protein, at 450,816 to 451,208
_RS02285
LU632_RS02290: LU632_RS02290 - YqjD family protein, at 451,211 to 451,516
_RS02290
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 448.994 kb on + strand at 449.280 kb on - strand at 449.341 kb on - strand, within LU632_RS02270 at 449.408 kb on + strand, within LU632_RS02270 at 449.524 kb on - strand, within LU632_RS02270 at 449.544 kb on + strand, within LU632_RS02270 at 449.600 kb on + strand at 449.657 kb on + strand at 450.062 kb on - strand, within LU632_RS02275 at 450.074 kb on + strand, within LU632_RS02275 at 450.193 kb on + strand, within LU632_RS02275 at 450.194 kb on - strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280 at 450.707 kb on + strand, within LU632_RS02280 at 450.802 kb on + strand at 450.802 kb on + strand at 450.802 kb on + strand at 450.803 kb on - strand at 450.803 kb on - strand at 450.832 kb on - strand at 450.849 kb on - strand at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.993 kb on - strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.996 kb on - strand, within LU632_RS02285 at 450.999 kb on + strand, within LU632_RS02285 at 451.029 kb on - strand, within LU632_RS02285 at 451.163 kb on + strand, within LU632_RS02285
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 448,994 + +2.3 449,280 - +1.6 449,341 - LU632_RS02270 0.10 +0.4 449,408 + LU632_RS02270 0.33 -1.0 449,524 - LU632_RS02270 0.72 +0.2 449,544 + LU632_RS02270 0.79 +3.0 449,600 + +1.5 449,657 + +3.4 450,062 - LU632_RS02275 0.38 +3.3 450,074 + LU632_RS02275 0.41 +0.1 450,193 + LU632_RS02275 0.72 +0.4 450,194 - LU632_RS02275 0.72 -0.9 450,195 + LU632_RS02275 0.72 -0.0 450,195 + LU632_RS02275 0.72 -0.3 450,195 + LU632_RS02275 0.72 -2.7 450,196 - LU632_RS02275 0.72 -1.4 450,196 - LU632_RS02275 0.72 +0.7 450,196 - LU632_RS02275 0.72 +2.4 450,299 - -0.9 450,308 + -0.9 450,368 - -0.7 450,551 + +0.5 450,574 - LU632_RS02280 0.14 -1.5 450,707 + LU632_RS02280 0.61 +0.6 450,802 + -1.1 450,802 + -0.6 450,802 + -1.2 450,803 - -1.6 450,803 - -1.5 450,832 - +1.0 450,849 - -1.0 450,982 - LU632_RS02285 0.42 +0.3 450,982 - LU632_RS02285 0.42 -1.4 450,982 - LU632_RS02285 0.42 +1.0 450,993 - LU632_RS02285 0.45 +1.5 450,995 + LU632_RS02285 0.46 +1.0 450,995 + LU632_RS02285 0.46 +0.2 450,996 - LU632_RS02285 0.46 +0.4 450,999 + LU632_RS02285 0.47 -0.3 451,029 - LU632_RS02285 0.54 -1.0 451,163 + LU632_RS02285 0.88 -2.3
Or see this region's nucleotide sequence