Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nfi and LU632_RS00995 are separated by 67 nucleotides LU632_RS00995 and hupA are separated by 188 nucleotides hupA and tnpA are separated by 167 nucleotides tnpA and LU632_RS01010 are separated by 190 nucleotides
LU632_RS00990: nfi - deoxyribonuclease V, at 214,597 to 215,265
nfi
LU632_RS00995: LU632_RS00995 - YjaG family protein, at 215,333 to 215,923
_RS00995
LU632_RS01000: hupA - DNA-binding protein HU-alpha, at 216,112 to 216,384
hupA
LU632_RS01005: tnpA - IS200/IS605 family transposase, at 216,552 to 216,992
tnpA
LU632_RS01010: LU632_RS01010 - sugar phosphate isomerase/epimerase, at 217,183 to 217,332
_RS01010
Position (kb) 216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.337 kb on + strand at 215.338 kb on - strand at 215.338 kb on - strand at 215.341 kb on + strand at 215.342 kb on - strand at 215.389 kb on + strand at 215.390 kb on - strand at 215.390 kb on - strand at 215.430 kb on - strand, within LU632_RS00995 at 215.483 kb on - strand, within LU632_RS00995 at 215.530 kb on + strand, within LU632_RS00995 at 215.585 kb on + strand, within LU632_RS00995 at 215.595 kb on - strand, within LU632_RS00995 at 215.603 kb on + strand, within LU632_RS00995 at 215.656 kb on - strand, within LU632_RS00995 at 215.856 kb on + strand, within LU632_RS00995 at 215.856 kb on + strand, within LU632_RS00995 at 215.856 kb on + strand, within LU632_RS00995 at 215.857 kb on - strand, within LU632_RS00995 at 215.955 kb on + strand at 215.994 kb on - strand at 216.032 kb on + strand at 216.032 kb on + strand at 216.033 kb on - strand at 216.093 kb on + strand at 216.093 kb on + strand at 216.094 kb on - strand at 216.094 kb on - strand at 216.094 kb on - strand at 216.112 kb on - strand at 216.137 kb on + strand at 216.174 kb on + strand, within hupA at 216.261 kb on + strand, within hupA at 216.262 kb on - strand, within hupA at 216.378 kb on + strand at 216.382 kb on + strand at 216.382 kb on + strand at 216.406 kb on + strand at 217.164 kb on + strand at 217.196 kb on - strand at 217.247 kb on - strand, within LU632_RS01010 at 217.253 kb on + strand, within LU632_RS01010 at 217.268 kb on - strand, within LU632_RS01010 at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.371 kb on - strand at 217.371 kb on - strand at 217.377 kb on + strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 215,337 + +0.6 215,338 - -0.3 215,338 - +0.7 215,341 + -0.3 215,342 - -0.7 215,389 + -2.0 215,390 - +0.7 215,390 - -0.5 215,430 - LU632_RS00995 0.16 +0.3 215,483 - LU632_RS00995 0.25 +0.8 215,530 + LU632_RS00995 0.33 +0.4 215,585 + LU632_RS00995 0.43 -0.8 215,595 - LU632_RS00995 0.44 -1.0 215,603 + LU632_RS00995 0.46 +2.4 215,656 - LU632_RS00995 0.55 -1.0 215,856 + LU632_RS00995 0.88 -0.3 215,856 + LU632_RS00995 0.88 +0.1 215,856 + LU632_RS00995 0.88 -1.2 215,857 - LU632_RS00995 0.89 +0.5 215,955 + +0.8 215,994 - +0.5 216,032 + -2.4 216,032 + -1.0 216,033 - -1.1 216,093 + -0.9 216,093 + -0.4 216,094 - -1.0 216,094 - -1.4 216,094 - -0.8 216,112 - -1.8 216,137 + +0.6 216,174 + hupA LU632_RS01000 0.23 -1.7 216,261 + hupA LU632_RS01000 0.55 -2.4 216,262 - hupA LU632_RS01000 0.55 -3.2 216,378 + +0.7 216,382 + -2.2 216,382 + +1.5 216,406 + +0.4 217,164 + -1.1 217,196 - +2.4 217,247 - LU632_RS01010 0.43 +0.3 217,253 + LU632_RS01010 0.47 +2.3 217,268 - LU632_RS01010 0.57 -2.3 217,370 + -2.3 217,370 + +0.3 217,370 + -2.4 217,370 + +0.5 217,371 - -1.4 217,371 - +0.1 217,377 + -2.1 217,378 - +1.0 217,378 - +1.1 217,378 - +0.0 217,379 + +0.0
Or see this region's nucleotide sequence