Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00570

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
117,171	+				-2.2
117,257	+				-2.3
117,259	+				+0.7
117,293	+				+0.0
117,309	+				-0.1
117,323	-				+0.6
117,334	+				-2.9
117,335	-				-0.8
117,364	+		LU632_RS00555	0.15	+1.1
117,430	+		LU632_RS00555	0.57	-0.7
117,451	+		LU632_RS00555	0.71	-0.8
117,563	+				+0.2
117,563	+				+1.4
117,640	-		LU632_RS00560	0.20	+0.7
117,640	-		LU632_RS00560	0.20	-2.5
117,650	-		LU632_RS00560	0.24	+0.3
117,775	+		LU632_RS00560	0.75	-0.0
117,893	+				-1.7
117,893	+				+0.3
117,894	-				-2.1
117,894	-				-0.2
117,894	-				-0.6
117,894	-				-2.2
117,894	-				-1.5
117,942	+		LU632_RS00565	0.36	+0.9
117,943	-		LU632_RS00565	0.37	+1.1
117,954	+		LU632_RS00565	0.44	-1.3
118,044	+				+2.9
118,044	+				-1.1
118,045	-				-2.7
118,045	-				-2.1
118,045	-				-1.6
118,045	-				-1.1
118,045	-				+0.6
118,045	-				-0.6
118,045	-				+0.2
118,045	-				+0.9
118,046	+				+2.6
118,046	+				-1.9
118,046	+				-2.1
118,046	+				+0.9
118,047	-				-0.8
118,047	-				+6.2
118,047	-				-0.1
118,047	-				+1.0
118,056	+				-2.1
118,074	+				+0.5
118,077	-				-2.5
118,284	-		LU632_RS00570	0.47	+2.8
118,288	+		LU632_RS00570	0.49	-0.6
118,370	+		LU632_RS00570	0.82	+0.8
118,370	+		LU632_RS00570	0.82	+0.9
118,370	+		LU632_RS00570	0.82	-1.2
118,371	-		LU632_RS00570	0.83	-2.6
118,371	-		LU632_RS00570	0.83	-0.3
118,371	-		LU632_RS00570	0.83	-0.5
118,374	+		LU632_RS00570	0.84	+1.1
118,375	-		LU632_RS00570	0.84	+1.4
118,385	+		LU632_RS00570	0.88	+2.2
118,436	+				-2.1
118,438	+				+1.0
118,439	-				-2.1
118,518	-				-1.7
118,558	-				+1.6
118,611	+				+0.3
118,611	+				+0.0
118,679	-				+0.8
118,715	-				+1.6
118,715	-				-2.6
118,736	+				-0.3
118,766	+				+0.1
118,805	+				+1.9
118,825	+				-0.0
118,826	-				-1.3
118,826	-				-1.7
118,888	+				+0.5
118,888	+				+2.6
118,936	+				+0.5
118,936	+				-0.5
118,959	+				-0.2
119,222	+				-0.6
119,223	-				-0.2
119,224	+				-3.3
119,224	+				-0.2