Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00165

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00155 and LU632_RS00160 are separated by 34 nucleotidesLU632_RS00160 and LU632_RS00165 are separated by 39 nucleotidesLU632_RS00165 and LU632_RS00170 are separated by 91 nucleotidesLU632_RS00170 and LU632_RS00175 are separated by 89 nucleotides LU632_RS00155: LU632_RS00155 - DUF943 family protein, at 30,056 to 30,429 _RS00155 LU632_RS00160: LU632_RS00160 - IS5 family transposase, at 30,464 to 31,239 _RS00160 LU632_RS00165: LU632_RS00165 - IS6 family transposase, at 31,279 to 31,968 _RS00165 LU632_RS00170: LU632_RS00170 - hypothetical protein, at 32,060 to 32,641 _RS00170 LU632_RS00175: LU632_RS00175 - IS6 family transposase, at 32,731 to 33,212 _RS00175 Position (kb) 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 30.307 kb on - strand, within LU632_RS00155at 30.317 kb on - strand, within LU632_RS00155at 30.341 kb on + strand, within LU632_RS00155at 30.341 kb on + strand, within LU632_RS00155at 30.346 kb on + strand, within LU632_RS00155at 30.476 kb on - strandat 31.462 kb on + strand, within LU632_RS00165at 31.462 kb on + strand, within LU632_RS00165at 31.695 kb on - strand, within LU632_RS00165at 32.012 kb on + strandat 32.013 kb on - strandat 32.018 kb on + strandat 32.018 kb on + strandat 32.028 kb on + strandat 32.029 kb on - strandat 32.029 kb on - strandat 32.036 kb on + strandat 32.036 kb on + strandat 32.037 kb on - strandat 32.037 kb on - strandat 32.037 kb on - strandat 32.037 kb on - strandat 32.040 kb on + strandat 32.041 kb on - strandat 32.041 kb on - strandat 32.068 kb on + strandat 32.068 kb on + strandat 32.203 kb on + strand, within LU632_RS00170at 32.203 kb on + strand, within LU632_RS00170at 32.204 kb on - strand, within LU632_RS00170at 32.206 kb on + strand, within LU632_RS00170at 32.206 kb on + strand, within LU632_RS00170at 32.206 kb on + strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.209 kb on - strand, within LU632_RS00170at 32.296 kb on - strand, within LU632_RS00170at 32.300 kb on - strand, within LU632_RS00170at 32.300 kb on - strand, within LU632_RS00170at 32.300 kb on - strand, within LU632_RS00170at 32.368 kb on + strand, within LU632_RS00170at 32.371 kb on + strand, within LU632_RS00170at 32.371 kb on + strand, within LU632_RS00170at 32.400 kb on + strand, within LU632_RS00170at 32.485 kb on + strand, within LU632_RS00170at 32.497 kb on + strand, within LU632_RS00170at 32.507 kb on + strand, within LU632_RS00170at 32.507 kb on + strand, within LU632_RS00170at 32.507 kb on + strand, within LU632_RS00170at 32.508 kb on - strand, within LU632_RS00170at 32.575 kb on + strand, within LU632_RS00170at 32.587 kb on + strandat 32.597 kb on - strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.603 kb on - strandat 32.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
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30,307 - LU632_RS00155 0.67 -0.2
30,317 - LU632_RS00155 0.70 -0.6
30,341 + LU632_RS00155 0.76 +1.3
30,341 + LU632_RS00155 0.76 +0.8
30,346 + LU632_RS00155 0.78 +0.5
30,476 - -1.4
31,462 + LU632_RS00165 0.27 -2.1
31,462 + LU632_RS00165 0.27 -3.0
31,695 - LU632_RS00165 0.60 -0.8
32,012 + -1.4
32,013 - +6.7
32,018 + -0.5
32,018 + +3.6
32,028 + -2.2
32,029 - +0.4
32,029 - -1.5
32,036 + +0.3
32,036 + +0.6
32,037 - +1.5
32,037 - -2.3
32,037 - +0.6
32,037 - -2.4
32,040 + -0.4
32,041 - -3.4
32,041 - -0.2
32,068 + -0.5
32,068 + +3.0
32,203 + LU632_RS00170 0.25 +0.0
32,203 + LU632_RS00170 0.25 +0.6
32,204 - LU632_RS00170 0.25 -2.7
32,206 + LU632_RS00170 0.25 -0.3
32,206 + LU632_RS00170 0.25 +0.9
32,206 + LU632_RS00170 0.25 -0.1
32,207 - LU632_RS00170 0.25 -0.8
32,207 - LU632_RS00170 0.25 -2.5
32,207 - LU632_RS00170 0.25 +1.9
32,207 - LU632_RS00170 0.25 +0.6
32,209 - LU632_RS00170 0.26 +0.3
32,296 - LU632_RS00170 0.41 -0.1
32,300 - LU632_RS00170 0.41 +2.3
32,300 - LU632_RS00170 0.41 -1.7
32,300 - LU632_RS00170 0.41 -0.4
32,368 + LU632_RS00170 0.53 -2.2
32,371 + LU632_RS00170 0.53 +1.4
32,371 + LU632_RS00170 0.53 -0.3
32,400 + LU632_RS00170 0.58 -3.7
32,485 + LU632_RS00170 0.73 -1.5
32,497 + LU632_RS00170 0.75 -1.0
32,507 + LU632_RS00170 0.77 +0.7
32,507 + LU632_RS00170 0.77 +0.2
32,507 + LU632_RS00170 0.77 +0.7
32,508 - LU632_RS00170 0.77 +1.2
32,575 + LU632_RS00170 0.88 +3.3
32,587 + +1.1
32,597 - +0.0
32,598 + -0.8
32,598 + +1.1
32,598 + +0.7
32,598 + +0.5
32,598 + +0.5
32,599 - -2.5
32,599 - +6.3
32,599 - -1.4
32,599 - +0.2
32,599 - -2.1
32,599 - +0.6
32,603 - -0.1
32,621 + -1.9

Or see this region's nucleotide sequence