Strain Fitness in Escherichia coli ECOR38 around HEPCGN_11995

Experiment: Bas48

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas48
1,137,933	+	yjaG	HEPCGN_11985	0.66	-0.9
1,138,033	+	yjaG	HEPCGN_11985	0.83	-2.0
1,138,034	-	yjaG	HEPCGN_11985	0.84	+0.4
1,138,037	+	yjaG	HEPCGN_11985	0.84	+0.2
1,138,037	+	yjaG	HEPCGN_11985	0.84	-0.7
1,138,043	-	yjaG	HEPCGN_11985	0.85	-0.4
1,138,043	-	yjaG	HEPCGN_11985	0.85	-1.0
1,138,174	+				+0.9
1,138,190	+				-0.7
1,138,191	-				+0.3
1,138,338	-	nfi	HEPCGN_11990	0.25	+0.1
1,138,462	-	nfi	HEPCGN_11990	0.43	+0.5
1,138,483	-	nfi	HEPCGN_11990	0.46	+0.3
1,138,549	-	nfi	HEPCGN_11990	0.56	+0.8
1,138,549	-	nfi	HEPCGN_11990	0.56	-1.7
1,138,549	-	nfi	HEPCGN_11990	0.56	+0.9
1,138,627	+	nfi	HEPCGN_11990	0.68	+0.1
1,138,627	+	nfi	HEPCGN_11990	0.68	-0.2
1,138,628	-	nfi	HEPCGN_11990	0.68	-0.3
1,138,628	-	nfi	HEPCGN_11990	0.68	+0.0
1,138,628	-	nfi	HEPCGN_11990	0.68	-0.9
1,138,659	-	nfi	HEPCGN_11990	0.72	+0.6
1,138,660	+	nfi	HEPCGN_11990	0.72	+0.0
1,138,828	-				-0.1
1,138,856	-				-0.2
1,139,953	+				-0.7
1,139,953	+				-0.7
1,139,965	+				-0.9
1,139,965	+				-2.2
1,139,965	+				+0.5
1,139,966	-				-0.5
1,139,990	+				-0.3
1,139,991	-				+0.2
1,139,998	-				-0.3
1,140,264	+	nudC	HEPCGN_12000	0.40	+0.3
1,140,270	-	nudC	HEPCGN_12000	0.40	-1.4
1,140,338	+	nudC	HEPCGN_12000	0.49	+0.2
1,140,443	-	nudC	HEPCGN_12000	0.63	+0.8
1,140,443	-	nudC	HEPCGN_12000	0.63	-0.9
1,140,443	-	nudC	HEPCGN_12000	0.63	+0.2
1,140,443	-	nudC	HEPCGN_12000	0.63	-0.8
1,140,474	+	nudC	HEPCGN_12000	0.67	+0.4
1,140,475	-	nudC	HEPCGN_12000	0.67	-0.2
1,140,475	-	nudC	HEPCGN_12000	0.67	-0.1
1,140,529	-	nudC	HEPCGN_12000	0.74	-1.2
1,140,529	-	nudC	HEPCGN_12000	0.74	-0.2
1,140,562	-	nudC	HEPCGN_12000	0.78	+0.3
1,140,562	-	nudC	HEPCGN_12000	0.78	-1.1
1,140,564	+	nudC	HEPCGN_12000	0.78	-1.2
1,140,643	+	nudC	HEPCGN_12000	0.89	-2.0
1,140,643	+	nudC	HEPCGN_12000	0.89	-0.3
1,140,720	+				-0.1
1,140,721	-				-0.1
1,140,723	-				+1.2
1,140,731	+				-0.7
1,140,731	+				+0.0
1,140,731	+				-0.7
1,140,731	+				-1.7
1,140,732	-				+0.1
1,140,766	+				+0.6
1,140,767	-				-0.0
1,140,831	+				+0.2
1,140,832	-				-0.3
1,140,832	-				+0.4
1,140,894	-	rsd	HEPCGN_12005	0.14	+0.8
1,140,899	+	rsd	HEPCGN_12005	0.15	-0.7
1,140,899	+	rsd	HEPCGN_12005	0.15	+0.5
1,140,899	+	rsd	HEPCGN_12005	0.15	-0.4
1,140,899	+	rsd	HEPCGN_12005	0.15	+0.2
1,140,899	+	rsd	HEPCGN_12005	0.15	-0.2
1,140,900	-	rsd	HEPCGN_12005	0.16	-0.7
1,140,900	-	rsd	HEPCGN_12005	0.16	+0.4
1,140,900	-	rsd	HEPCGN_12005	0.16	+0.5
1,140,903	+	rsd	HEPCGN_12005	0.16	-0.1