Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcuB and fumB are separated by 77 nucleotides fumB and yjdF are separated by 122 nucleotides yjdF and melB are separated by 138 nucleotides
HEPCGN_11155: dcuB - anaerobic C4-dicarboxylate transporter DcuB, at 969,097 to 970,437
dcuB
HEPCGN_11160: fumB - class I fumarate hydratase, at 970,515 to 972,161
fumB
HEPCGN_11165: yjdF - Inner membrane protein YjdF, at 972,284 to 972,913
yjdF
HEPCGN_11170: melB - melibiose:sodium transporter MelB, at 973,052 to 974,461
melB
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.748 kb on + strand, within dcuB at 969.748 kb on + strand, within dcuB at 969.748 kb on + strand, within dcuB at 969.749 kb on - strand, within dcuB at 969.749 kb on - strand, within dcuB at 969.749 kb on - strand, within dcuB at 969.755 kb on - strand, within dcuB at 969.924 kb on + strand, within dcuB at 969.925 kb on - strand, within dcuB at 969.979 kb on - strand, within dcuB at 970.031 kb on - strand, within dcuB at 970.071 kb on + strand, within dcuB at 970.072 kb on - strand, within dcuB at 970.072 kb on - strand, within dcuB at 970.072 kb on - strand, within dcuB at 970.072 kb on - strand, within dcuB at 970.127 kb on - strand, within dcuB at 970.264 kb on + strand, within dcuB at 970.265 kb on - strand, within dcuB at 970.265 kb on - strand, within dcuB at 970.265 kb on - strand, within dcuB at 970.436 kb on - strand at 970.500 kb on + strand at 970.500 kb on + strand at 970.500 kb on + strand at 970.501 kb on - strand at 970.515 kb on - strand at 970.532 kb on + strand at 970.532 kb on + strand at 970.536 kb on + strand at 970.575 kb on + strand at 970.578 kb on + strand at 970.578 kb on + strand at 970.578 kb on + strand at 970.579 kb on - strand at 970.579 kb on - strand at 970.579 kb on - strand at 970.583 kb on - strand at 970.597 kb on - strand at 970.768 kb on - strand, within fumB at 970.920 kb on + strand, within fumB at 970.921 kb on - strand, within fumB at 970.929 kb on + strand, within fumB at 970.930 kb on - strand, within fumB at 970.931 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.977 kb on + strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.978 kb on - strand, within fumB at 970.980 kb on - strand, within fumB at 971.025 kb on + strand, within fumB at 971.026 kb on - strand, within fumB at 971.033 kb on - strand, within fumB at 971.047 kb on - strand, within fumB at 971.095 kb on - strand, within fumB at 971.095 kb on - strand, within fumB at 971.175 kb on - strand, within fumB at 971.193 kb on + strand, within fumB at 971.199 kb on - strand, within fumB at 971.392 kb on - strand, within fumB at 971.392 kb on - strand, within fumB at 971.487 kb on - strand, within fumB at 971.487 kb on - strand, within fumB at 971.547 kb on + strand, within fumB at 971.604 kb on - strand, within fumB at 971.751 kb on + strand, within fumB at 971.773 kb on - strand, within fumB at 971.775 kb on + strand, within fumB at 971.775 kb on + strand, within fumB at 971.853 kb on + strand, within fumB at 971.853 kb on + strand, within fumB at 971.854 kb on - strand, within fumB at 972.051 kb on - strand at 972.107 kb on + strand at 972.107 kb on + strand at 972.155 kb on + strand at 972.156 kb on - strand at 972.156 kb on - strand at 972.160 kb on - strand at 972.160 kb on - strand at 972.160 kb on - strand at 972.258 kb on + strand at 972.258 kb on + strand at 972.313 kb on + strand at 972.468 kb on - strand, within yjdF at 972.516 kb on - strand, within yjdF at 972.516 kb on - strand, within yjdF at 972.521 kb on + strand, within yjdF at 972.656 kb on + strand, within yjdF at 972.656 kb on + strand, within yjdF at 972.670 kb on + strand, within yjdF at 972.671 kb on - strand, within yjdF at 972.723 kb on - strand, within yjdF at 972.729 kb on + strand, within yjdF at 972.730 kb on - strand, within yjdF at 972.843 kb on + strand, within yjdF at 972.992 kb on - strand at 972.995 kb on - strand at 973.009 kb on + strand at 973.015 kb on + strand at 973.016 kb on - strand at 973.016 kb on - strand at 973.016 kb on - strand at 973.041 kb on + strand at 973.041 kb on + strand at 973.041 kb on + strand at 973.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 969,748 + dcuB HEPCGN_11155 0.49 +0.9 969,748 + dcuB HEPCGN_11155 0.49 -0.8 969,748 + dcuB HEPCGN_11155 0.49 +0.4 969,749 - dcuB HEPCGN_11155 0.49 -0.7 969,749 - dcuB HEPCGN_11155 0.49 +0.1 969,749 - dcuB HEPCGN_11155 0.49 -0.9 969,755 - dcuB HEPCGN_11155 0.49 -0.3 969,924 + dcuB HEPCGN_11155 0.62 -0.1 969,925 - dcuB HEPCGN_11155 0.62 +0.1 969,979 - dcuB HEPCGN_11155 0.66 +0.9 970,031 - dcuB HEPCGN_11155 0.70 +1.2 970,071 + dcuB HEPCGN_11155 0.73 -0.2 970,072 - dcuB HEPCGN_11155 0.73 -0.3 970,072 - dcuB HEPCGN_11155 0.73 -0.0 970,072 - dcuB HEPCGN_11155 0.73 +0.4 970,072 - dcuB HEPCGN_11155 0.73 +0.6 970,127 - dcuB HEPCGN_11155 0.77 +0.6 970,264 + dcuB HEPCGN_11155 0.87 -0.1 970,265 - dcuB HEPCGN_11155 0.87 -0.2 970,265 - dcuB HEPCGN_11155 0.87 -0.2 970,265 - dcuB HEPCGN_11155 0.87 +0.0 970,436 - +0.1 970,500 + +0.0 970,500 + +2.4 970,500 + +0.0 970,501 - -0.6 970,515 - -1.4 970,532 + -0.3 970,532 + +1.4 970,536 + -1.0 970,575 + -1.3 970,578 + -0.1 970,578 + -0.9 970,578 + -0.3 970,579 - +0.1 970,579 - -0.3 970,579 - +0.2 970,583 - +1.1 970,597 - +1.4 970,768 - fumB HEPCGN_11160 0.15 +0.6 970,920 + fumB HEPCGN_11160 0.25 -0.1 970,921 - fumB HEPCGN_11160 0.25 -0.8 970,929 + fumB HEPCGN_11160 0.25 -0.0 970,930 - fumB HEPCGN_11160 0.25 -1.1 970,931 + fumB HEPCGN_11160 0.25 +0.2 970,977 + fumB HEPCGN_11160 0.28 +0.2 970,977 + fumB HEPCGN_11160 0.28 +0.4 970,977 + fumB HEPCGN_11160 0.28 +0.8 970,977 + fumB HEPCGN_11160 0.28 +0.8 970,977 + fumB HEPCGN_11160 0.28 -0.4 970,977 + fumB HEPCGN_11160 0.28 -0.2 970,977 + fumB HEPCGN_11160 0.28 -0.2 970,978 - fumB HEPCGN_11160 0.28 -0.7 970,978 - fumB HEPCGN_11160 0.28 +0.2 970,978 - fumB HEPCGN_11160 0.28 -0.7 970,978 - fumB HEPCGN_11160 0.28 +0.1 970,978 - fumB HEPCGN_11160 0.28 +1.2 970,978 - fumB HEPCGN_11160 0.28 -0.6 970,978 - fumB HEPCGN_11160 0.28 -1.0 970,978 - fumB HEPCGN_11160 0.28 +0.5 970,980 - fumB HEPCGN_11160 0.28 -1.2 971,025 + fumB HEPCGN_11160 0.31 -1.0 971,026 - fumB HEPCGN_11160 0.31 -0.5 971,033 - fumB HEPCGN_11160 0.31 -0.8 971,047 - fumB HEPCGN_11160 0.32 +0.3 971,095 - fumB HEPCGN_11160 0.35 -1.1 971,095 - fumB HEPCGN_11160 0.35 -1.2 971,175 - fumB HEPCGN_11160 0.40 +0.3 971,193 + fumB HEPCGN_11160 0.41 -0.4 971,199 - fumB HEPCGN_11160 0.42 -0.8 971,392 - fumB HEPCGN_11160 0.53 +0.7 971,392 - fumB HEPCGN_11160 0.53 +1.1 971,487 - fumB HEPCGN_11160 0.59 -0.2 971,487 - fumB HEPCGN_11160 0.59 +0.1 971,547 + fumB HEPCGN_11160 0.63 -0.3 971,604 - fumB HEPCGN_11160 0.66 +0.9 971,751 + fumB HEPCGN_11160 0.75 -0.5 971,773 - fumB HEPCGN_11160 0.76 +0.2 971,775 + fumB HEPCGN_11160 0.77 +0.6 971,775 + fumB HEPCGN_11160 0.77 +1.0 971,853 + fumB HEPCGN_11160 0.81 -1.0 971,853 + fumB HEPCGN_11160 0.81 -1.0 971,854 - fumB HEPCGN_11160 0.81 -0.4 972,051 - +0.2 972,107 + +0.1 972,107 + -0.1 972,155 + +0.4 972,156 - +0.8 972,156 - +1.2 972,160 - +1.2 972,160 - -0.5 972,160 - -0.6 972,258 + -1.0 972,258 + +0.0 972,313 + +0.6 972,468 - yjdF HEPCGN_11165 0.29 -1.8 972,516 - yjdF HEPCGN_11165 0.37 +1.3 972,516 - yjdF HEPCGN_11165 0.37 -0.2 972,521 + yjdF HEPCGN_11165 0.38 +0.1 972,656 + yjdF HEPCGN_11165 0.59 +0.6 972,656 + yjdF HEPCGN_11165 0.59 +0.2 972,670 + yjdF HEPCGN_11165 0.61 -1.0 972,671 - yjdF HEPCGN_11165 0.61 -0.5 972,723 - yjdF HEPCGN_11165 0.70 -0.0 972,729 + yjdF HEPCGN_11165 0.71 +0.8 972,730 - yjdF HEPCGN_11165 0.71 +0.5 972,843 + yjdF HEPCGN_11165 0.89 -0.7 972,992 - +0.1 972,995 - +0.9 973,009 + -0.0 973,015 + +0.8 973,016 - +0.7 973,016 - +0.2 973,016 - +0.2 973,041 + -0.2 973,041 + +1.4 973,041 + -1.0 973,112 + +0.5
Or see this region's nucleotide sequence