Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05305

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspy and ves are separated by 202 nucleotidesves and cho overlap by 41 nucleotidescho and nadE are separated by 229 nucleotides HEPCGN_05295: spy - ATP-independent periplasmic protein-refolding chaperone Spy, at 936,186 to 936,671 spy HEPCGN_05300: ves - environmental stress-induced protein Ves, at 936,874 to 937,449 ves HEPCGN_05305: cho - excinuclease Cho, at 937,409 to 938,296 cho HEPCGN_05315: nadE - ammonia-dependent NAD(+) synthetase, at 938,526 to 939,353 nadE Position (kb) 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1at 936.527 kb on + strand, within spyat 936.528 kb on - strand, within spyat 936.723 kb on - strandat 936.798 kb on + strandat 936.798 kb on + strandat 936.799 kb on - strandat 936.873 kb on + strandat 936.888 kb on + strandat 936.889 kb on - strandat 937.104 kb on + strand, within vesat 937.151 kb on + strand, within vesat 937.152 kb on - strand, within vesat 937.219 kb on - strand, within vesat 937.255 kb on - strand, within vesat 937.455 kb on + strandat 937.489 kb on + strandat 937.582 kb on + strand, within choat 937.586 kb on - strand, within choat 937.590 kb on + strand, within choat 937.591 kb on - strand, within choat 937.658 kb on + strand, within choat 937.659 kb on - strand, within choat 937.909 kb on - strand, within choat 938.004 kb on - strand, within choat 938.057 kb on - strand, within choat 938.149 kb on - strand, within choat 938.226 kb on - strandat 938.513 kb on + strandat 938.514 kb on - strandat 938.514 kb on - strandat 938.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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936,527 + spy HEPCGN_05295 0.70 +0.0
936,528 - spy HEPCGN_05295 0.70 -0.1
936,723 - +0.5
936,798 + -0.6
936,798 + +0.0
936,799 - +0.2
936,873 + -2.9
936,888 + +0.2
936,889 - -0.6
937,104 + ves HEPCGN_05300 0.40 +0.2
937,151 + ves HEPCGN_05300 0.48 +0.2
937,152 - ves HEPCGN_05300 0.48 -0.1
937,219 - ves HEPCGN_05300 0.60 -0.9
937,255 - ves HEPCGN_05300 0.66 -1.6
937,455 + -0.6
937,489 + +0.2
937,582 + cho HEPCGN_05305 0.19 +1.1
937,586 - cho HEPCGN_05305 0.20 -0.2
937,590 + cho HEPCGN_05305 0.20 -0.3
937,591 - cho HEPCGN_05305 0.20 -0.9
937,658 + cho HEPCGN_05305 0.28 +0.4
937,659 - cho HEPCGN_05305 0.28 +0.4
937,909 - cho HEPCGN_05305 0.56 -0.9
938,004 - cho HEPCGN_05305 0.67 -1.3
938,057 - cho HEPCGN_05305 0.73 -1.2
938,149 - cho HEPCGN_05305 0.83 -0.4
938,226 - -1.1
938,513 + +1.1
938,514 - -0.1
938,514 - -0.1
938,514 - -0.6

Or see this region's nucleotide sequence