Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehB and yehA are separated by 15 nucleotides yehA and rcnB are separated by 81 nucleotides rcnB and rcnA are separated by 218 nucleotides
HEPCGN_02730: yehB - Outer membrane usher protein YehB, at 455,827 to 458,307
yehB
HEPCGN_02735: yehA - putative fimbrial-like adhesin protein, at 458,323 to 459,357
yehA
HEPCGN_02740: rcnB - Ni(II)/Co(II) efflux transporter accessory subunit RcnB, at 459,439 to 459,777
rcnB
HEPCGN_02745: rcnA - Nickel/cobalt efflux system RcnA, at 459,996 to 460,793
rcnA
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 457.337 kb on + strand, within yehB at 457.347 kb on - strand, within yehB at 457.380 kb on + strand, within yehB at 457.426 kb on + strand, within yehB at 457.426 kb on + strand, within yehB at 457.426 kb on + strand, within yehB at 457.427 kb on - strand, within yehB at 457.544 kb on + strand, within yehB at 457.546 kb on + strand, within yehB at 457.547 kb on - strand, within yehB at 457.547 kb on - strand, within yehB at 457.593 kb on + strand, within yehB at 457.594 kb on - strand, within yehB at 457.635 kb on + strand, within yehB at 457.810 kb on - strand, within yehB at 457.863 kb on + strand, within yehB at 457.873 kb on + strand, within yehB at 457.873 kb on + strand, within yehB at 458.378 kb on - strand at 458.464 kb on + strand, within yehA at 458.536 kb on - strand, within yehA at 458.604 kb on + strand, within yehA at 458.823 kb on - strand, within yehA at 458.888 kb on - strand, within yehA at 458.968 kb on - strand, within yehA at 459.249 kb on + strand, within yehA at 459.356 kb on - strand at 459.525 kb on - strand, within rcnB at 459.561 kb on + strand, within rcnB at 459.565 kb on + strand, within rcnB at 459.603 kb on - strand, within rcnB at 459.618 kb on + strand, within rcnB at 459.639 kb on + strand, within rcnB at 459.687 kb on + strand, within rcnB at 459.763 kb on - strand at 459.816 kb on - strand at 459.829 kb on + strand at 459.834 kb on + strand at 459.834 kb on + strand at 459.834 kb on + strand at 459.835 kb on - strand at 459.949 kb on - strand at 460.006 kb on - strand at 460.024 kb on - strand at 460.024 kb on - strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.033 kb on + strand at 460.034 kb on - strand at 460.095 kb on - strand, within rcnA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 457,337 + yehB HEPCGN_02730 0.61 -0.3 457,347 - yehB HEPCGN_02730 0.61 -0.3 457,380 + yehB HEPCGN_02730 0.63 +2.6 457,426 + yehB HEPCGN_02730 0.64 +1.1 457,426 + yehB HEPCGN_02730 0.64 -0.2 457,426 + yehB HEPCGN_02730 0.64 -0.3 457,427 - yehB HEPCGN_02730 0.64 +0.4 457,544 + yehB HEPCGN_02730 0.69 +0.1 457,546 + yehB HEPCGN_02730 0.69 +1.0 457,547 - yehB HEPCGN_02730 0.69 -0.2 457,547 - yehB HEPCGN_02730 0.69 -1.2 457,593 + yehB HEPCGN_02730 0.71 +0.2 457,594 - yehB HEPCGN_02730 0.71 +0.2 457,635 + yehB HEPCGN_02730 0.73 +0.1 457,810 - yehB HEPCGN_02730 0.80 +0.3 457,863 + yehB HEPCGN_02730 0.82 +1.3 457,873 + yehB HEPCGN_02730 0.82 -0.3 457,873 + yehB HEPCGN_02730 0.82 -0.2 458,378 - -0.8 458,464 + yehA HEPCGN_02735 0.14 -0.2 458,536 - yehA HEPCGN_02735 0.21 +1.6 458,604 + yehA HEPCGN_02735 0.27 -1.2 458,823 - yehA HEPCGN_02735 0.48 -0.8 458,888 - yehA HEPCGN_02735 0.55 +0.5 458,968 - yehA HEPCGN_02735 0.62 +1.3 459,249 + yehA HEPCGN_02735 0.89 -0.5 459,356 - +0.3 459,525 - rcnB HEPCGN_02740 0.25 +0.1 459,561 + rcnB HEPCGN_02740 0.36 -0.3 459,565 + rcnB HEPCGN_02740 0.37 -0.8 459,603 - rcnB HEPCGN_02740 0.48 -1.0 459,618 + rcnB HEPCGN_02740 0.53 +0.5 459,639 + rcnB HEPCGN_02740 0.59 +0.2 459,687 + rcnB HEPCGN_02740 0.73 +1.8 459,763 - -0.1 459,816 - +0.1 459,829 + +0.2 459,834 + -0.4 459,834 + -0.3 459,834 + +0.8 459,835 - +0.4 459,949 - -0.1 460,006 - -0.7 460,024 - -1.8 460,024 - +0.4 460,033 + +1.2 460,033 + -0.6 460,033 + +0.2 460,033 + +0.2 460,033 + -1.6 460,033 + +2.0 460,033 + +1.2 460,034 - -0.2 460,095 - rcnA HEPCGN_02745 0.12 -1.3
Or see this region's nucleotide sequence