Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02195

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-ISEc81 and yohP are separated by 501 nucleotidesyohP and mdtQ are separated by 469 nucleotides HEPCGN_02190: tnp-ISEc81 - IS110 family ISEc81 transposase, at 362,112 to 363,137 tnp-ISEc81 HEPCGN_02195: yohP - protein YohP, at 363,639 to 363,722 yohP HEPCGN_02200: mdtQ - multidrug resistance outer membrane protein MdtQ, at 364,192 to 365,382 mdtQ Position (kb) 363 364Strain fitness (log2 ratio) -1 0 1at 363.047 kb on - strandat 363.047 kb on - strandat 363.552 kb on + strandat 363.630 kb on + strandat 363.635 kb on - strandat 363.645 kb on + strandat 363.653 kb on + strand, within yohPat 363.654 kb on - strand, within yohPat 363.755 kb on + strandat 363.854 kb on + strandat 363.891 kb on + strandat 363.892 kb on - strandat 363.937 kb on + strandat 364.018 kb on - strandat 364.129 kb on + strandat 364.158 kb on + strandat 364.158 kb on + strandat 364.347 kb on + strand, within mdtQat 364.434 kb on + strand, within mdtQat 364.450 kb on - strand, within mdtQat 364.455 kb on + strand, within mdtQat 364.610 kb on + strand, within mdtQat 364.611 kb on - strand, within mdtQat 364.611 kb on - strand, within mdtQat 364.613 kb on - strand, within mdtQat 364.613 kb on - strand, within mdtQat 364.660 kb on - strand, within mdtQat 364.660 kb on - strand, within mdtQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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363,047 - +0.7
363,047 - +0.4
363,552 + -0.1
363,630 + +0.6
363,635 - +0.9
363,645 + -1.2
363,653 + yohP HEPCGN_02195 0.17 -0.1
363,654 - yohP HEPCGN_02195 0.18 +0.0
363,755 + -0.3
363,854 + -0.7
363,891 + +0.5
363,892 - +0.9
363,937 + -0.1
364,018 - +0.1
364,129 + -0.4
364,158 + -0.1
364,158 + +0.2
364,347 + mdtQ HEPCGN_02200 0.13 +0.9
364,434 + mdtQ HEPCGN_02200 0.20 -0.3
364,450 - mdtQ HEPCGN_02200 0.22 -0.5
364,455 + mdtQ HEPCGN_02200 0.22 +0.4
364,610 + mdtQ HEPCGN_02200 0.35 -0.5
364,611 - mdtQ HEPCGN_02200 0.35 -1.0
364,611 - mdtQ HEPCGN_02200 0.35 +1.0
364,613 - mdtQ HEPCGN_02200 0.35 -0.8
364,613 - mdtQ HEPCGN_02200 0.35 -1.5
364,660 - mdtQ HEPCGN_02200 0.39 +1.3
364,660 - mdtQ HEPCGN_02200 0.39 +0.9

Or see this region's nucleotide sequence