Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00910

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmrdB and mrdA are separated by 2 nucleotidesmrdA and rlmH are separated by 30 nucleotidesrlmH and rsfS are separated by 3 nucleotides HEPCGN_00905: mrdB - peptidoglycan glycosyltransferase MrdB, at 108,804 to 109,916 mrdB HEPCGN_00910: mrdA - peptidoglycan DD-transpeptidase MrdA, at 109,919 to 111,820 mrdA HEPCGN_00915: rlmH - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 111,851 to 112,318 rlmH HEPCGN_00920: rsfS - ribosome silencing factor, at 112,322 to 112,639 rsfS Position (kb) 109 110 111 112Strain fitness (log2 ratio) -1 0 1at 109.988 kb on - strandat 109.988 kb on - strandat 111.850 kb on - strandat 112.068 kb on - strand, within rlmHat 112.496 kb on - strand, within rsfSat 112.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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109,988 - -0.1
109,988 - +0.1
111,850 - -1.7
112,068 - rlmH HEPCGN_00915 0.46 -0.4
112,496 - rsfS HEPCGN_00920 0.55 -0.4
112,685 - +0.4

Or see this region's nucleotide sequence