Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00435 and HEPCGN_00440 are separated by 41 nucleotides HEPCGN_00440 and fII are separated by 11 nucleotides fII and HEPCGN_00450 are separated by 11 nucleotides HEPCGN_00450 and HEPCGN_00455 overlap by 4 nucleotides HEPCGN_00455 and yjdB are separated by 7 nucleotides
HEPCGN_00435: HEPCGN_00435 - Major capsid protein, at 11,397 to 12,161
_00435
HEPCGN_00440: HEPCGN_00440 - DNA-packaging protein FI, at 12,203 to 12,601
_00440
HEPCGN_00445: fII - Head-tail connector protein FII, at 12,613 to 12,966
fII
HEPCGN_00450: HEPCGN_00450 - Tail completion protein Z, at 12,978 to 13,556
_00450
HEPCGN_00455: HEPCGN_00455 - phage tail protein, at 13,553 to 13,948
_00455
HEPCGN_00460: yjdB - phage tail protein, at 13,956 to 14,696
yjdB
Position (kb) 12
13 Strain fitness (log2 ratio) -1
0
1 at 11.857 kb on - strand, within HEPCGN_00435 at 11.868 kb on + strand, within HEPCGN_00435 at 11.868 kb on + strand, within HEPCGN_00435 at 11.868 kb on + strand, within HEPCGN_00435 at 11.868 kb on + strand, within HEPCGN_00435 at 11.868 kb on + strand, within HEPCGN_00435 at 11.869 kb on - strand, within HEPCGN_00435 at 11.869 kb on - strand, within HEPCGN_00435 at 11.869 kb on - strand, within HEPCGN_00435 at 11.869 kb on - strand, within HEPCGN_00435 at 11.869 kb on - strand, within HEPCGN_00435 at 11.869 kb on - strand, within HEPCGN_00435 at 11.988 kb on + strand, within HEPCGN_00435 at 12.729 kb on - strand, within fII
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 11,857 - HEPCGN_00435 0.60 +1.3 11,868 + HEPCGN_00435 0.62 +0.1 11,868 + HEPCGN_00435 0.62 +0.2 11,868 + HEPCGN_00435 0.62 +0.8 11,868 + HEPCGN_00435 0.62 -0.2 11,868 + HEPCGN_00435 0.62 +0.9 11,869 - HEPCGN_00435 0.62 +1.2 11,869 - HEPCGN_00435 0.62 -0.7 11,869 - HEPCGN_00435 0.62 +0.1 11,869 - HEPCGN_00435 0.62 -0.2 11,869 - HEPCGN_00435 0.62 +0.5 11,869 - HEPCGN_00435 0.62 +0.3 11,988 + HEPCGN_00435 0.77 +1.0 12,729 - fII HEPCGN_00445 0.33 +0.7
Or see this region's nucleotide sequence