Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25505

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25495 and LU632_RS25500 overlap by 8 nucleotidesLU632_RS25500 and LU632_RS25505 are separated by 252 nucleotidesLU632_RS25505 and LU632_RS25510 are separated by 148 nucleotidesLU632_RS25510 and LU632_RS25515 are separated by 88 nucleotides LU632_RS25495: LU632_RS25495 - type II toxin-antitoxin system MqsA family antitoxin, at 31,942 to 32,256 _RS25495 LU632_RS25500: LU632_RS25500 - toxin, at 32,249 to 32,593 _RS25500 LU632_RS25505: LU632_RS25505 - methyltransferase, at 32,846 to 33,148 _RS25505 LU632_RS25510: LU632_RS25510 - transposase, at 33,297 to 33,560 _RS25510 LU632_RS25515: LU632_RS25515 - IS91 family transposase, at 33,649 to 34,872 _RS25515 Position (kb) 32 33 34Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 31.910 kb on - strandat 31.934 kb on + strandat 31.935 kb on - strandat 31.935 kb on - strandat 32.101 kb on - strand, within LU632_RS25495at 32.344 kb on - strand, within LU632_RS25500at 32.348 kb on - strand, within LU632_RS25500at 32.348 kb on - strand, within LU632_RS25500at 32.388 kb on + strand, within LU632_RS25500at 32.389 kb on - strand, within LU632_RS25500at 32.389 kb on - strand, within LU632_RS25500at 32.420 kb on - strand, within LU632_RS25500at 32.444 kb on + strand, within LU632_RS25500at 32.522 kb on - strand, within LU632_RS25500at 32.553 kb on + strand, within LU632_RS25500at 32.554 kb on - strand, within LU632_RS25500at 32.576 kb on + strandat 32.579 kb on - strandat 32.579 kb on - strandat 32.579 kb on - strandat 32.579 kb on - strandat 32.583 kb on - strandat 32.590 kb on - strandat 32.590 kb on - strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.679 kb on + strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.680 kb on - strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.741 kb on + strandat 32.742 kb on - strandat 32.742 kb on - strandat 32.742 kb on - strandat 32.742 kb on - strandat 32.859 kb on + strandat 32.928 kb on + strand, within LU632_RS25505at 32.929 kb on + strand, within LU632_RS25505at 32.929 kb on - strand, within LU632_RS25505at 32.962 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.096 kb on + strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.097 kb on - strand, within LU632_RS25505at 33.149 kb on + strandat 33.150 kb on - strandat 33.347 kb on + strand, within LU632_RS25510at 33.364 kb on + strand, within LU632_RS25510at 33.364 kb on + strand, within LU632_RS25510at 33.364 kb on + strand, within LU632_RS25510at 33.364 kb on + strand, within LU632_RS25510at 33.364 kb on + strand, within LU632_RS25510at 33.365 kb on - strand, within LU632_RS25510at 33.365 kb on - strand, within LU632_RS25510at 33.365 kb on - strand, within LU632_RS25510at 33.391 kb on + strand, within LU632_RS25510at 33.474 kb on + strand, within LU632_RS25510at 33.482 kb on + strand, within LU632_RS25510at 33.482 kb on + strand, within LU632_RS25510at 33.482 kb on + strand, within LU632_RS25510at 33.482 kb on + strand, within LU632_RS25510at 33.483 kb on - strand, within LU632_RS25510at 33.483 kb on - strand, within LU632_RS25510

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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31,910 - -1.7
31,934 + -1.1
31,935 - -2.4
31,935 - -3.2
32,101 - LU632_RS25495 0.50 -4.6
32,344 - LU632_RS25500 0.28 -0.8
32,348 - LU632_RS25500 0.29 +0.6
32,348 - LU632_RS25500 0.29 +1.6
32,388 + LU632_RS25500 0.40 +1.5
32,389 - LU632_RS25500 0.41 +0.8
32,389 - LU632_RS25500 0.41 -2.1
32,420 - LU632_RS25500 0.50 +0.6
32,444 + LU632_RS25500 0.57 +0.9
32,522 - LU632_RS25500 0.79 -1.3
32,553 + LU632_RS25500 0.88 -0.4
32,554 - LU632_RS25500 0.88 -0.5
32,576 + +0.2
32,579 - -0.1
32,579 - +6.4
32,579 - -0.9
32,579 - -0.4
32,583 - +0.3
32,590 - -0.3
32,590 - -0.2
32,679 + -2.1
32,679 + -1.2
32,679 + -1.2
32,679 + +0.8
32,679 + +0.5
32,679 + +2.9
32,679 + +0.9
32,679 + +2.1
32,679 + +1.8
32,679 + -0.3
32,679 + +0.8
32,680 - -1.5
32,680 - -1.3
32,680 - -0.2
32,680 - -3.1
32,680 - +0.1
32,680 - +1.0
32,680 - -0.7
32,680 - -1.3
32,680 - -1.1
32,741 + +1.3
32,741 + -2.3
32,741 + +0.9
32,741 + -2.3
32,741 + +0.4
32,741 + -1.0
32,741 + +2.0
32,741 + +0.2
32,742 - -2.2
32,742 - +2.3
32,742 - -0.3
32,742 - +0.4
32,859 + -0.9
32,928 + LU632_RS25505 0.27 -0.9
32,929 + LU632_RS25505 0.27 -3.4
32,929 - LU632_RS25505 0.27 +0.5
32,962 + LU632_RS25505 0.38 +0.0
33,096 + LU632_RS25505 0.83 +1.7
33,096 + LU632_RS25505 0.83 -1.3
33,096 + LU632_RS25505 0.83 +1.2
33,096 + LU632_RS25505 0.83 +0.2
33,096 + LU632_RS25505 0.83 -2.3
33,096 + LU632_RS25505 0.83 +0.8
33,096 + LU632_RS25505 0.83 +0.3
33,096 + LU632_RS25505 0.83 -0.9
33,097 - LU632_RS25505 0.83 -0.8
33,097 - LU632_RS25505 0.83 -0.2
33,097 - LU632_RS25505 0.83 +3.9
33,097 - LU632_RS25505 0.83 -1.2
33,097 - LU632_RS25505 0.83 +1.1
33,097 - LU632_RS25505 0.83 -1.9
33,097 - LU632_RS25505 0.83 +1.1
33,149 + +4.9
33,150 - -0.5
33,347 + LU632_RS25510 0.19 +0.6
33,364 + LU632_RS25510 0.25 +0.4
33,364 + LU632_RS25510 0.25 +0.1
33,364 + LU632_RS25510 0.25 +0.3
33,364 + LU632_RS25510 0.25 -0.6
33,364 + LU632_RS25510 0.25 -5.3
33,365 - LU632_RS25510 0.26 +1.0
33,365 - LU632_RS25510 0.26 -2.4
33,365 - LU632_RS25510 0.26 -1.3
33,391 + LU632_RS25510 0.36 -0.6
33,474 + LU632_RS25510 0.67 -1.7
33,482 + LU632_RS25510 0.70 -1.5
33,482 + LU632_RS25510 0.70 -0.3
33,482 + LU632_RS25510 0.70 +2.1
33,482 + LU632_RS25510 0.70 -0.7
33,483 - LU632_RS25510 0.70 +0.3
33,483 - LU632_RS25510 0.70 +0.1

Or see this region's nucleotide sequence