Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traO and LU632_RS25365 are separated by 11 nucleotides LU632_RS25365 and traQ overlap by 1 nucleotides traQ and LU632_RS25375 are separated by 26 nucleotides LU632_RS25375 and LU632_RS25380 are separated by 51 nucleotides
LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061
traO
LU632_RS25365: LU632_RS25365 - hypothetical protein, at 7,073 to 7,867
_RS25365
LU632_RS25370: traQ - conjugal transfer protein TraQ, at 7,867 to 8,394
traQ
LU632_RS25375: LU632_RS25375 - hypothetical protein, at 8,421 to 8,804
_RS25375
LU632_RS25380: LU632_RS25380 - hypothetical protein, at 8,856 to 9,809
_RS25380
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 6.968 kb on - strand at 7.051 kb on + strand at 7.051 kb on + strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.212 kb on - strand, within LU632_RS25365 at 7.251 kb on + strand, within LU632_RS25365 at 7.252 kb on - strand, within LU632_RS25365 at 7.258 kb on - strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.360 kb on - strand, within LU632_RS25365 at 7.495 kb on - strand, within LU632_RS25365 at 7.612 kb on - strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.696 kb on - strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.932 kb on - strand, within traQ at 8.010 kb on + strand, within traQ at 8.089 kb on - strand, within traQ at 8.140 kb on + strand, within traQ at 8.141 kb on - strand, within traQ at 8.234 kb on + strand, within traQ at 8.234 kb on + strand, within traQ at 8.234 kb on + strand, within traQ at 8.235 kb on - strand, within traQ at 8.235 kb on - strand, within traQ at 8.235 kb on - strand, within traQ at 8.392 kb on + strand at 8.400 kb on + strand at 8.643 kb on - strand, within LU632_RS25375 at 8.645 kb on + strand, within LU632_RS25375 at 8.654 kb on - strand, within LU632_RS25375 at 8.842 kb on + strand at 8.930 kb on + strand at 8.972 kb on + strand, within LU632_RS25380 at 9.042 kb on + strand, within LU632_RS25380 at 9.213 kb on - strand, within LU632_RS25380 at 9.338 kb on + strand, within LU632_RS25380
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 6,968 - -1.6 7,051 + -1.5 7,051 + +2.9 7,052 - -2.0 7,052 - +0.9 7,052 - -0.5 7,052 - -1.1 7,212 - LU632_RS25365 0.17 -0.3 7,251 + LU632_RS25365 0.22 -2.1 7,252 - LU632_RS25365 0.23 -0.1 7,258 - LU632_RS25365 0.23 +0.0 7,265 + LU632_RS25365 0.24 -2.1 7,265 + LU632_RS25365 0.24 +0.4 7,360 - LU632_RS25365 0.36 +0.3 7,495 - LU632_RS25365 0.53 -0.1 7,612 - LU632_RS25365 0.68 +2.2 7,695 + LU632_RS25365 0.78 -0.1 7,695 + LU632_RS25365 0.78 -0.3 7,695 + LU632_RS25365 0.78 -0.6 7,696 - LU632_RS25365 0.78 +2.3 7,714 + LU632_RS25365 0.81 -1.7 7,714 + LU632_RS25365 0.81 -1.6 7,714 + LU632_RS25365 0.81 -0.3 7,714 + LU632_RS25365 0.81 +1.0 7,714 + LU632_RS25365 0.81 +1.2 7,715 - LU632_RS25365 0.81 -0.9 7,715 - LU632_RS25365 0.81 -1.4 7,715 - LU632_RS25365 0.81 +0.1 7,715 - LU632_RS25365 0.81 -0.9 7,932 - traQ LU632_RS25370 0.12 -1.3 8,010 + traQ LU632_RS25370 0.27 +0.6 8,089 - traQ LU632_RS25370 0.42 +0.1 8,140 + traQ LU632_RS25370 0.52 +1.7 8,141 - traQ LU632_RS25370 0.52 +0.8 8,234 + traQ LU632_RS25370 0.70 +0.5 8,234 + traQ LU632_RS25370 0.70 -1.0 8,234 + traQ LU632_RS25370 0.70 -1.4 8,235 - traQ LU632_RS25370 0.70 +1.3 8,235 - traQ LU632_RS25370 0.70 -0.7 8,235 - traQ LU632_RS25370 0.70 +1.9 8,392 + +0.3 8,400 + +0.8 8,643 - LU632_RS25375 0.58 -1.8 8,645 + LU632_RS25375 0.58 -0.7 8,654 - LU632_RS25375 0.61 -0.5 8,842 + -1.0 8,930 + -0.6 8,972 + LU632_RS25380 0.12 -2.5 9,042 + LU632_RS25380 0.19 -1.1 9,213 - LU632_RS25380 0.37 -2.7 9,338 + LU632_RS25380 0.51 -3.7
Or see this region's nucleotide sequence