Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25345 and LU632_RS25350 are separated by 15 nucleotides LU632_RS25350 and LU632_RS25355 are separated by 60 nucleotides LU632_RS25355 and traO are separated by 2 nucleotides
LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776
_RS25345
LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073
_RS25350
LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799
_RS25355
LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061
traO
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.135 kb on + strand at 4.136 kb on - strand at 4.136 kb on - strand at 4.200 kb on + strand at 4.300 kb on + strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.489 kb on + strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.615 kb on - strand, within LU632_RS25345 at 4.692 kb on + strand, within LU632_RS25345 at 4.977 kb on + strand, within LU632_RS25350 at 4.988 kb on + strand, within LU632_RS25350 at 5.272 kb on + strand, within LU632_RS25355 at 5.272 kb on + strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.578 kb on - strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.786 kb on + strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.798 kb on - strand at 5.848 kb on + strand at 5.849 kb on - strand at 5.858 kb on + strand at 5.994 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.008 kb on - strand, within traO at 6.239 kb on - strand, within traO at 6.277 kb on + strand, within traO at 6.278 kb on - strand, within traO at 6.432 kb on - strand, within traO at 6.528 kb on + strand, within traO at 6.529 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.585 kb on - strand, within traO at 6.611 kb on + strand, within traO at 6.611 kb on + strand, within traO at 6.612 kb on - strand, within traO at 6.626 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.696 kb on - strand, within traO at 6.696 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.767 kb on + strand, within traO
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 4,135 + +2.3 4,136 - +0.0 4,136 - +0.6 4,200 + +0.4 4,300 + LU632_RS25345 0.23 -2.6 4,443 - LU632_RS25345 0.46 -2.4 4,443 - LU632_RS25345 0.46 +0.3 4,487 - LU632_RS25345 0.53 +0.5 4,487 - LU632_RS25345 0.53 -2.3 4,489 + LU632_RS25345 0.54 -0.1 4,490 - LU632_RS25345 0.54 -1.8 4,490 - LU632_RS25345 0.54 +1.1 4,490 - LU632_RS25345 0.54 +2.0 4,612 + LU632_RS25345 0.73 +0.9 4,612 + LU632_RS25345 0.73 -0.2 4,612 + LU632_RS25345 0.73 +2.4 4,612 + LU632_RS25345 0.73 -1.6 4,613 - LU632_RS25345 0.74 +0.9 4,613 - LU632_RS25345 0.74 -2.1 4,613 - LU632_RS25345 0.74 +0.8 4,613 - LU632_RS25345 0.74 -0.6 4,613 - LU632_RS25345 0.74 -1.2 4,613 - LU632_RS25345 0.74 -1.1 4,613 - LU632_RS25345 0.74 +0.2 4,613 - LU632_RS25345 0.74 -1.3 4,614 + LU632_RS25345 0.74 -2.0 4,614 + LU632_RS25345 0.74 -1.3 4,614 + LU632_RS25345 0.74 -0.1 4,615 - LU632_RS25345 0.74 +1.3 4,692 + LU632_RS25345 0.86 -0.0 4,977 + LU632_RS25350 0.66 -0.7 4,988 + LU632_RS25350 0.70 -2.2 5,272 + LU632_RS25355 0.21 -0.9 5,272 + LU632_RS25355 0.21 -0.6 5,275 - LU632_RS25355 0.21 +2.7 5,275 - LU632_RS25355 0.21 -0.7 5,578 - LU632_RS25355 0.67 -1.8 5,650 + LU632_RS25355 0.77 +0.7 5,650 + LU632_RS25355 0.77 -0.7 5,650 + LU632_RS25355 0.77 -1.4 5,650 + LU632_RS25355 0.77 -2.6 5,650 + LU632_RS25355 0.77 -1.0 5,650 + LU632_RS25355 0.77 +1.3 5,651 - LU632_RS25355 0.78 -0.2 5,651 - LU632_RS25355 0.78 -0.6 5,722 + LU632_RS25355 0.88 -3.4 5,722 + LU632_RS25355 0.88 -1.0 5,723 - LU632_RS25355 0.88 -1.6 5,723 - LU632_RS25355 0.88 +0.9 5,786 + -1.9 5,787 - -1.3 5,787 - +0.3 5,787 - -0.2 5,787 - -0.2 5,798 - -1.8 5,848 + +2.6 5,849 - -0.1 5,858 + -1.6 5,994 + traO LU632_RS25360 0.15 -3.2 6,007 + traO LU632_RS25360 0.16 +1.0 6,007 + traO LU632_RS25360 0.16 +0.7 6,008 - traO LU632_RS25360 0.16 -0.7 6,239 - traO LU632_RS25360 0.35 -0.0 6,277 + traO LU632_RS25360 0.38 -0.7 6,278 - traO LU632_RS25360 0.38 +1.2 6,432 - traO LU632_RS25360 0.50 +0.8 6,528 + traO LU632_RS25360 0.58 +0.6 6,529 - traO LU632_RS25360 0.58 -1.7 6,545 - traO LU632_RS25360 0.59 +0.2 6,545 - traO LU632_RS25360 0.59 +1.5 6,585 - traO LU632_RS25360 0.62 +1.3 6,611 + traO LU632_RS25360 0.64 +0.3 6,611 + traO LU632_RS25360 0.64 -0.5 6,612 - traO LU632_RS25360 0.64 +0.4 6,626 + traO LU632_RS25360 0.65 -1.5 6,695 + traO LU632_RS25360 0.71 -0.4 6,695 + traO LU632_RS25360 0.71 -2.8 6,695 + traO LU632_RS25360 0.71 -0.6 6,696 - traO LU632_RS25360 0.71 +0.5 6,696 - traO LU632_RS25360 0.71 -0.6 6,754 - traO LU632_RS25360 0.76 -1.3 6,754 - traO LU632_RS25360 0.76 -1.4 6,754 - traO LU632_RS25360 0.76 -1.3 6,767 + traO LU632_RS25360 0.77 +0.5
Or see this region's nucleotide sequence