Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24820

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
4,728,890	-				+1.2
4,728,896	-				-0.3
4,728,905	+				+0.9
4,728,931	-				+1.1
4,728,931	-				-2.9
4,729,209	+				-0.3
4,729,215	-				-0.6
4,729,463	-	mioC	LU632_RS24820	0.43	-1.4
4,729,467	+	mioC	LU632_RS24820	0.44	-0.1
4,729,467	+	mioC	LU632_RS24820	0.44	-0.2
4,729,472	+	mioC	LU632_RS24820	0.45	+0.6
4,729,473	-	mioC	LU632_RS24820	0.45	+0.4
4,729,473	-	mioC	LU632_RS24820	0.45	+0.9
4,729,477	-	mioC	LU632_RS24820	0.46	+0.8
4,729,560	+	mioC	LU632_RS24820	0.65	+0.2
4,729,560	+	mioC	LU632_RS24820	0.65	+1.7
4,729,561	-	mioC	LU632_RS24820	0.65	+0.0
4,729,561	-	mioC	LU632_RS24820	0.65	-2.5
4,729,608	+	mioC	LU632_RS24820	0.76	+0.2
4,729,612	-	mioC	LU632_RS24820	0.77	-0.3
4,729,612	-	mioC	LU632_RS24820	0.77	+0.2
4,729,612	-	mioC	LU632_RS24820	0.77	-1.2
4,729,666	+	mioC	LU632_RS24820	0.89	+2.3
4,729,666	+	mioC	LU632_RS24820	0.89	-0.2
4,729,680	+				+1.3
4,729,680	+				-0.7
4,729,704	+				+0.0
4,729,705	-				+0.1
4,729,738	+				-1.1
4,729,742	+				+1.1
4,729,747	+				-0.1
4,729,747	+				+3.1
4,729,759	-				+0.6
4,729,770	+				+0.9
4,729,771	-				-1.5
4,729,780	+				-0.0
4,729,810	-				+2.7
4,729,810	-				-2.0