Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ovoA and asnC are separated by 120 nucleotides asnC and LU632_RS24705 are separated by 88 nucleotides
LU632_RS24695: ovoA - 5-histidylcysteine sulfoxide synthase, at 4,703,349 to 4,705,457
ovoA
LU632_RS24700: asnC - transcriptional regulator AsnC, at 4,705,578 to 4,706,039
asnC
LU632_RS24705: LU632_RS24705 - hypothetical protein, at 4,706,128 to 4,707,396
_RS24705
Position (kb) 4705
4706
4707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4704.587 kb on + strand, within ovoA at 4704.596 kb on + strand, within ovoA at 4704.649 kb on - strand, within ovoA at 4704.690 kb on + strand, within ovoA at 4704.691 kb on - strand, within ovoA at 4704.732 kb on + strand, within ovoA at 4704.732 kb on + strand, within ovoA at 4704.759 kb on + strand, within ovoA at 4704.760 kb on - strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.805 kb on - strand, within ovoA at 4704.805 kb on - strand, within ovoA at 4704.950 kb on + strand, within ovoA at 4704.994 kb on - strand, within ovoA at 4705.106 kb on + strand, within ovoA at 4705.196 kb on + strand, within ovoA at 4705.200 kb on - strand, within ovoA at 4705.200 kb on - strand, within ovoA at 4705.245 kb on + strand, within ovoA at 4705.245 kb on + strand, within ovoA at 4705.246 kb on - strand, within ovoA at 4705.248 kb on - strand at 4705.248 kb on - strand at 4705.248 kb on - strand at 4705.566 kb on + strand at 4705.566 kb on + strand at 4705.583 kb on - strand at 4705.622 kb on + strand at 4705.623 kb on - strand at 4705.654 kb on - strand, within asnC at 4705.802 kb on + strand, within asnC at 4705.878 kb on + strand, within asnC at 4705.878 kb on + strand, within asnC at 4705.879 kb on - strand, within asnC at 4706.031 kb on - strand at 4706.031 kb on - strand at 4706.080 kb on + strand at 4706.132 kb on + strand at 4706.132 kb on + strand at 4706.176 kb on - strand at 4706.231 kb on - strand at 4706.313 kb on + strand, within LU632_RS24705 at 4706.346 kb on + strand, within LU632_RS24705 at 4706.347 kb on - strand, within LU632_RS24705 at 4706.347 kb on - strand, within LU632_RS24705 at 4706.704 kb on + strand, within LU632_RS24705 at 4706.704 kb on + strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.735 kb on - strand, within LU632_RS24705 at 4706.737 kb on - strand, within LU632_RS24705 at 4706.799 kb on + strand, within LU632_RS24705 at 4706.800 kb on - strand, within LU632_RS24705 at 4706.863 kb on - strand, within LU632_RS24705 at 4706.867 kb on + strand, within LU632_RS24705 at 4706.904 kb on + strand, within LU632_RS24705 at 4706.904 kb on + strand, within LU632_RS24705 at 4706.905 kb on - strand, within LU632_RS24705 at 4706.918 kb on + strand, within LU632_RS24705 at 4706.919 kb on - strand, within LU632_RS24705 at 4706.943 kb on + strand, within LU632_RS24705 at 4707.014 kb on + strand, within LU632_RS24705
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 4,704,587 + ovoA LU632_RS24695 0.59 +0.4 4,704,596 + ovoA LU632_RS24695 0.59 -0.3 4,704,649 - ovoA LU632_RS24695 0.62 -1.7 4,704,690 + ovoA LU632_RS24695 0.64 -0.1 4,704,691 - ovoA LU632_RS24695 0.64 +1.4 4,704,732 + ovoA LU632_RS24695 0.66 +1.6 4,704,732 + ovoA LU632_RS24695 0.66 -0.8 4,704,759 + ovoA LU632_RS24695 0.67 +0.9 4,704,760 - ovoA LU632_RS24695 0.67 +0.4 4,704,804 + ovoA LU632_RS24695 0.69 -0.2 4,704,804 + ovoA LU632_RS24695 0.69 +1.1 4,704,804 + ovoA LU632_RS24695 0.69 -1.9 4,704,805 - ovoA LU632_RS24695 0.69 -0.3 4,704,805 - ovoA LU632_RS24695 0.69 +2.3 4,704,950 + ovoA LU632_RS24695 0.76 +1.1 4,704,994 - ovoA LU632_RS24695 0.78 -1.1 4,705,106 + ovoA LU632_RS24695 0.83 -1.5 4,705,196 + ovoA LU632_RS24695 0.88 -0.8 4,705,200 - ovoA LU632_RS24695 0.88 +1.7 4,705,200 - ovoA LU632_RS24695 0.88 +0.5 4,705,245 + ovoA LU632_RS24695 0.90 -0.3 4,705,245 + ovoA LU632_RS24695 0.90 +0.9 4,705,246 - ovoA LU632_RS24695 0.90 +0.1 4,705,248 - +1.1 4,705,248 - -0.3 4,705,248 - -0.1 4,705,566 + +3.2 4,705,566 + -0.2 4,705,583 - -0.7 4,705,622 + -0.3 4,705,623 - +0.3 4,705,654 - asnC LU632_RS24700 0.16 +0.7 4,705,802 + asnC LU632_RS24700 0.48 +0.1 4,705,878 + asnC LU632_RS24700 0.65 +1.0 4,705,878 + asnC LU632_RS24700 0.65 -1.1 4,705,879 - asnC LU632_RS24700 0.65 -0.5 4,706,031 - +0.4 4,706,031 - -0.5 4,706,080 + +0.4 4,706,132 + +0.9 4,706,132 + +0.5 4,706,176 - -1.9 4,706,231 - -1.6 4,706,313 + LU632_RS24705 0.15 -3.0 4,706,346 + LU632_RS24705 0.17 +0.5 4,706,347 - LU632_RS24705 0.17 +2.0 4,706,347 - LU632_RS24705 0.17 +0.2 4,706,704 + LU632_RS24705 0.45 -1.8 4,706,704 + LU632_RS24705 0.45 -2.0 4,706,705 - LU632_RS24705 0.45 -1.3 4,706,705 - LU632_RS24705 0.45 +2.0 4,706,705 - LU632_RS24705 0.45 +0.2 4,706,705 - LU632_RS24705 0.45 -0.7 4,706,705 - LU632_RS24705 0.45 -2.6 4,706,735 - LU632_RS24705 0.48 +1.1 4,706,737 - LU632_RS24705 0.48 -1.5 4,706,799 + LU632_RS24705 0.53 +1.3 4,706,800 - LU632_RS24705 0.53 -0.5 4,706,863 - LU632_RS24705 0.58 +0.2 4,706,867 + LU632_RS24705 0.58 +0.2 4,706,904 + LU632_RS24705 0.61 -2.5 4,706,904 + LU632_RS24705 0.61 +0.2 4,706,905 - LU632_RS24705 0.61 +0.9 4,706,918 + LU632_RS24705 0.62 -1.8 4,706,919 - LU632_RS24705 0.62 +2.9 4,706,943 + LU632_RS24705 0.64 -1.9 4,707,014 + LU632_RS24705 0.70 -0.7
Or see this region's nucleotide sequence