Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24350 and LU632_RS24355 are separated by 100 nucleotides LU632_RS24355 and LU632_RS24360 overlap by 1 nucleotides LU632_RS24360 and LU632_RS24365 are separated by 196 nucleotides LU632_RS24365 and LU632_RS24370 are separated by 80 nucleotides
LU632_RS24350: LU632_RS24350 - IS6 family transposase, at 4,645,318 to 4,646,022
_RS24350
LU632_RS24355: LU632_RS24355 - type II toxin-antitoxin system PemK/MazF family toxin, at 4,646,123 to 4,646,488
_RS24355
LU632_RS24360: LU632_RS24360 - hypothetical protein, at 4,646,488 to 4,646,760
_RS24360
LU632_RS24365: LU632_RS24365 - IS6 family transposase, at 4,646,957 to 4,647,514
_RS24365
LU632_RS24370: LU632_RS24370 - IS91 family transposase, at 4,647,595 to 4,648,818
_RS24370
Position (kb) 4646
4647 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4646.158 kb on + strand at 4646.173 kb on + strand, within LU632_RS24355 at 4646.174 kb on - strand, within LU632_RS24355 at 4646.174 kb on - strand, within LU632_RS24355 at 4646.293 kb on - strand, within LU632_RS24355 at 4646.397 kb on + strand, within LU632_RS24355 at 4646.397 kb on + strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.400 kb on + strand, within LU632_RS24355 at 4646.401 kb on - strand, within LU632_RS24355 at 4646.493 kb on + strand at 4646.494 kb on - strand at 4646.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 4,646,158 + +4.2 4,646,173 + LU632_RS24355 0.14 -0.2 4,646,174 - LU632_RS24355 0.14 -0.8 4,646,174 - LU632_RS24355 0.14 -1.5 4,646,293 - LU632_RS24355 0.46 +3.2 4,646,397 + LU632_RS24355 0.75 -0.2 4,646,397 + LU632_RS24355 0.75 +0.0 4,646,398 - LU632_RS24355 0.75 -0.9 4,646,398 - LU632_RS24355 0.75 -1.2 4,646,398 - LU632_RS24355 0.75 +0.5 4,646,398 - LU632_RS24355 0.75 -0.5 4,646,400 + LU632_RS24355 0.76 -0.4 4,646,401 - LU632_RS24355 0.76 +4.7 4,646,493 + -1.7 4,646,494 - -1.9 4,646,798 - +2.5
Or see this region's nucleotide sequence