Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22780

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
4,336,222	+				+0.7
4,336,222	+				+2.3
4,336,224	+				-0.4
4,336,224	+				+0.8
4,336,337	+		LU632_RS22775	0.14	-0.6
4,336,410	+		LU632_RS22775	0.26	-0.6
4,336,410	+		LU632_RS22775	0.26	-0.3
4,336,410	+		LU632_RS22775	0.26	-2.0
4,336,411	-		LU632_RS22775	0.27	-0.1
4,336,496	+		LU632_RS22775	0.41	-1.7
4,336,507	-		LU632_RS22775	0.42	-0.1
4,336,781	+		LU632_RS22775	0.88	+0.6
4,336,781	+		LU632_RS22775	0.88	-0.9
4,336,781	+		LU632_RS22775	0.88	-0.6
4,336,781	+		LU632_RS22775	0.88	+3.3
4,336,782	-		LU632_RS22775	0.88	+2.4
4,336,784	+		LU632_RS22775	0.88	-0.6
4,336,784	+		LU632_RS22775	0.88	-2.6
4,336,784	+		LU632_RS22775	0.88	-0.0
4,336,784	+		LU632_RS22775	0.88	-0.7
4,336,784	+		LU632_RS22775	0.88	-0.2
4,336,785	-		LU632_RS22775	0.89	+1.0
4,336,785	-		LU632_RS22775	0.89	+0.9
4,336,785	-		LU632_RS22775	0.89	+1.0
4,336,787	+		LU632_RS22775	0.89	+0.0
4,336,787	+		LU632_RS22775	0.89	-0.9
4,336,787	+		LU632_RS22775	0.89	+1.0
4,336,787	+		LU632_RS22775	0.89	-0.0
4,336,788	-		LU632_RS22775	0.89	-0.1
4,336,788	-		LU632_RS22775	0.89	+0.3
4,336,788	-		LU632_RS22775	0.89	+1.4
4,336,788	-		LU632_RS22775	0.89	+0.7
4,336,788	-		LU632_RS22775	0.89	+0.8
4,336,854	-				-0.1
4,336,902	+				-1.5
4,336,908	+				-0.7
4,336,928	+				+1.9
4,336,945	+				+4.3
4,336,945	+				-1.0
4,337,125	-		LU632_RS22780	0.19	-1.9
4,337,168	-		LU632_RS22780	0.24	-2.1
4,337,384	+		LU632_RS22780	0.46	-3.4
4,337,384	+		LU632_RS22780	0.46	+0.4
4,337,384	+		LU632_RS22780	0.46	-0.2
4,337,428	+		LU632_RS22780	0.51	-1.4
4,337,429	-		LU632_RS22780	0.51	+0.3
4,337,429	-		LU632_RS22780	0.51	-1.4
4,337,524	+		LU632_RS22780	0.61	+0.3
4,337,683	+		LU632_RS22780	0.77	+0.3
4,337,758	-		LU632_RS22780	0.85	-1.8
4,337,836	+				-3.3
4,337,837	-				-2.3
4,337,851	+				+2.4
4,337,890	+				-1.3
4,337,890	+				-1.3
4,337,890	+				-3.5
4,337,891	-				-0.4
4,337,891	-				+0.8
4,337,898	+				-0.8
4,337,899	-				+0.9
4,337,931	+				+0.6
4,338,008	-		LU632_RS22785	0.37	+1.3
4,338,008	-		LU632_RS22785	0.37	-0.1
4,338,062	+		LU632_RS22785	0.61	-1.1
4,338,251	+				+2.9
4,338,252	-				+1.1
4,338,284	+				-1.0
4,338,284	+				-0.3
4,338,285	-				-1.3
4,338,340	+				+0.3
4,338,418	-				+3.3
4,338,457	+				-0.4
4,338,463	+				+2.0
4,338,464	-				+3.4
4,338,464	-				+1.3
4,338,464	-				-1.1
4,338,629	-		LU632_RS22790	0.19	+3.3
4,338,635	-		LU632_RS22790	0.20	-0.2
4,338,719	+		LU632_RS22790	0.29	-2.4
4,338,719	+		LU632_RS22790	0.29	+1.4
4,338,719	+		LU632_RS22790	0.29	+2.8
4,338,752	+		LU632_RS22790	0.33	+1.4
4,338,752	+		LU632_RS22790	0.33	+1.8
4,338,753	-		LU632_RS22790	0.33	+1.8
4,338,761	-		LU632_RS22790	0.34	+2.3
4,338,848	+		LU632_RS22790	0.44	+2.3