Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21360

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
4,082,686	-		LU632_RS21355	0.36	+1.1
4,082,755	+		LU632_RS21355	0.41	-0.3
4,082,755	+		LU632_RS21355	0.41	-0.9
4,082,755	+		LU632_RS21355	0.41	-0.1
4,082,756	-		LU632_RS21355	0.41	-0.1
4,082,756	-		LU632_RS21355	0.41	+2.1
4,082,756	-		LU632_RS21355	0.41	-2.5
4,082,756	-		LU632_RS21355	0.41	-0.2
4,082,757	+		LU632_RS21355	0.42	+1.1
4,082,757	+		LU632_RS21355	0.42	+0.1
4,082,757	+		LU632_RS21355	0.42	-0.1
4,082,875	+		LU632_RS21355	0.50	-1.9
4,082,875	+		LU632_RS21355	0.50	+1.8
4,082,876	-		LU632_RS21355	0.50	+2.2
4,082,876	-		LU632_RS21355	0.50	+0.7
4,082,876	-		LU632_RS21355	0.50	+0.3
4,082,973	+		LU632_RS21355	0.57	+0.4
4,083,020	-		LU632_RS21355	0.61	-0.3
4,083,292	+		LU632_RS21355	0.81	+0.4
4,083,292	+		LU632_RS21355	0.81	+0.3
4,083,293	-		LU632_RS21355	0.81	+0.3
4,083,427	+				-2.0
4,083,427	+				-0.6
4,083,427	+				+1.6
4,083,428	-				+1.1
4,083,428	-				-0.1
4,083,428	-				+1.7
4,083,430	+				+1.2
4,083,480	+				+0.3
4,083,481	-				+0.0
4,083,490	+				+0.1
4,083,491	-				-1.1
4,083,535	+				-0.5
4,083,535	+				+0.8
4,083,536	-				+0.4
4,083,536	-				+0.4
4,083,536	-				+2.0
4,083,540	-				-0.2
4,083,540	-				+0.3
4,083,540	-				-1.2
4,083,646	+				-1.3
4,083,646	+				-4.1
4,083,647	-				-3.9
4,083,686	-				-1.1
4,083,772	-	degS	LU632_RS21360	0.13	+2.4
4,083,816	+	degS	LU632_RS21360	0.17	-0.6
4,083,816	+	degS	LU632_RS21360	0.17	-1.7
4,083,899	+	degS	LU632_RS21360	0.25	+0.1
4,083,952	+	degS	LU632_RS21360	0.30	-1.1
4,084,020	-	degS	LU632_RS21360	0.37	-2.6
4,084,055	+	degS	LU632_RS21360	0.40	-2.5
4,084,056	-	degS	LU632_RS21360	0.40	-4.7
4,084,060	+	degS	LU632_RS21360	0.40	-3.5
4,084,110	+	degS	LU632_RS21360	0.45	-2.0
4,084,110	+	degS	LU632_RS21360	0.45	-1.9
4,084,111	-	degS	LU632_RS21360	0.45	-2.7
4,084,112	+	degS	LU632_RS21360	0.45	-4.1
4,084,113	-	degS	LU632_RS21360	0.45	-1.9
4,084,113	-	degS	LU632_RS21360	0.45	-3.3
4,084,142	+	degS	LU632_RS21360	0.48	-5.1
4,084,295	+	degS	LU632_RS21360	0.63	+2.4
4,084,296	-	degS	LU632_RS21360	0.63	-3.3
4,084,296	-	degS	LU632_RS21360	0.63	-2.6
4,084,401	-	degS	LU632_RS21360	0.73	-2.9
4,084,401	-	degS	LU632_RS21360	0.73	-2.5
4,084,407	-	degS	LU632_RS21360	0.73	-3.3
4,084,408	+	degS	LU632_RS21360	0.73	-2.7
4,084,409	-	degS	LU632_RS21360	0.73	+0.8
4,084,433	-	degS	LU632_RS21360	0.76	-1.8
4,084,461	-	degS	LU632_RS21360	0.78	-0.6
4,084,461	-	degS	LU632_RS21360	0.78	-1.2
4,084,461	-	degS	LU632_RS21360	0.78	-1.8
4,084,535	-	degS	LU632_RS21360	0.85	-2.1
4,084,535	-	degS	LU632_RS21360	0.85	-4.6
4,084,547	-	degS	LU632_RS21360	0.86	-1.7
4,084,553	+	degS	LU632_RS21360	0.87	-2.5
4,084,553	+	degS	LU632_RS21360	0.87	-2.0
4,084,628	+				-1.9
4,084,632	-				-3.1
4,084,638	-				-3.3
4,084,689	+				-0.2
4,084,727	+				-3.1
4,084,728	-				-4.1
4,084,728	-				+0.4
4,084,731	+				-0.7
4,084,732	-				-0.8
4,084,774	+				-3.7
4,084,783	+				-4.0
4,084,791	-				+0.1
4,084,823	+				-1.8
4,084,824	-	mdh	LU632_RS21365	0.10	-1.9
4,084,839	-	mdh	LU632_RS21365	0.12	-0.6
4,084,908	+	mdh	LU632_RS21365	0.19	-3.4
4,084,909	-	mdh	LU632_RS21365	0.19	-4.0
4,085,090	+	mdh	LU632_RS21365	0.38	-0.4
4,085,201	-	mdh	LU632_RS21365	0.50	-3.5
4,085,274	-	mdh	LU632_RS21365	0.58	-3.3
4,085,300	-	mdh	LU632_RS21365	0.61	-1.3
4,085,344	+	mdh	LU632_RS21365	0.66	-4.5
4,085,344	+	mdh	LU632_RS21365	0.66	-1.6
4,085,344	+	mdh	LU632_RS21365	0.66	-4.8
4,085,368	+	mdh	LU632_RS21365	0.68	+4.0
4,085,387	-	mdh	LU632_RS21365	0.70	-0.2
4,085,397	-	mdh	LU632_RS21365	0.71	-2.6
4,085,476	+	mdh	LU632_RS21365	0.80	-3.4
4,085,501	-	mdh	LU632_RS21365	0.82	-0.4
4,085,563	+	mdh	LU632_RS21365	0.89	+1.4
4,085,669	-				-1.8
4,085,681	-				-2.2
4,085,681	-				-2.2
4,085,682	+				-4.9
4,085,683	-				+0.1
4,085,683	-				-1.8
4,085,685	+				-3.7
4,085,685	+				-3.3