Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21350

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
4,080,712	+		LU632_RS21345	0.32	+1.4
4,080,843	+		LU632_RS21345	0.43	-0.6
4,080,869	+		LU632_RS21345	0.45	+1.1
4,080,870	-		LU632_RS21345	0.46	-1.8
4,080,976	+		LU632_RS21345	0.55	-1.2
4,080,977	-		LU632_RS21345	0.55	-1.4
4,081,001	+		LU632_RS21345	0.57	-2.6
4,081,002	-		LU632_RS21345	0.57	-2.1
4,081,002	-		LU632_RS21345	0.57	-2.6
4,081,003	+		LU632_RS21345	0.57	-2.6
4,081,004	-		LU632_RS21345	0.57	-2.9
4,081,103	+		LU632_RS21345	0.66	-4.2
4,081,124	+		LU632_RS21345	0.68	-1.6
4,081,125	-		LU632_RS21345	0.68	-3.7
4,081,125	-		LU632_RS21345	0.68	-4.2
4,081,156	+		LU632_RS21345	0.71	-1.8
4,081,214	-		LU632_RS21345	0.76	-1.4
4,081,255	+		LU632_RS21345	0.80	-1.6
4,081,255	+		LU632_RS21345	0.80	-1.2
4,081,256	-		LU632_RS21345	0.80	-3.5
4,081,256	-		LU632_RS21345	0.80	-0.6
4,081,257	+		LU632_RS21345	0.80	-3.5
4,081,257	+		LU632_RS21345	0.80	-2.0
4,081,258	-		LU632_RS21345	0.80	-3.3
4,081,258	-		LU632_RS21345	0.80	-2.7
4,081,305	-		LU632_RS21345	0.84	-2.3
4,081,309	+		LU632_RS21345	0.84	-0.6
4,081,333	+		LU632_RS21345	0.87	-3.9
4,081,333	+		LU632_RS21345	0.87	-4.1
4,081,367	-		LU632_RS21345	0.90	-3.4
4,081,378	-				-2.8
4,081,381	+				-2.2
4,081,484	-				-0.2
4,081,484	-				+1.5
4,081,484	-				-0.1
4,081,592	-				+1.3
4,081,600	+				-0.9
4,081,601	-				+2.0
4,081,632	+				-0.7
4,081,655	-				+4.9
4,081,666	+				+3.1
4,081,667	-				+3.5
4,081,669	+				+4.6
4,081,670	-				+3.8
4,081,682	+				+2.2
4,081,741	+		LU632_RS21350	0.18	+1.0
4,081,775	+		LU632_RS21350	0.26	+4.1
4,081,864	+		LU632_RS21350	0.48	+3.0
4,081,897	+		LU632_RS21350	0.56	+2.8
4,081,923	+		LU632_RS21350	0.62	+0.8
4,082,079	+				+0.2
4,082,080	-				+0.1
4,082,080	-				+2.0
4,082,083	-				-3.0
4,082,155	-				-0.2
4,082,155	-				-0.5
4,082,170	+				-0.4
4,082,238	+				+1.1
4,082,238	+				+0.5
4,082,239	-				+0.3
4,082,242	+				-0.5
4,082,358	+		LU632_RS21355	0.12	+0.1
4,082,359	-		LU632_RS21355	0.12	-2.4
4,082,359	-		LU632_RS21355	0.12	-0.5
4,082,392	+		LU632_RS21355	0.15	+1.7
4,082,393	-		LU632_RS21355	0.15	+2.4
4,082,394	+		LU632_RS21355	0.15	-0.3
4,082,507	+		LU632_RS21355	0.23	+3.2
4,082,507	+		LU632_RS21355	0.23	+2.0
4,082,508	-		LU632_RS21355	0.23	+2.0
4,082,509	+		LU632_RS21355	0.23	+1.2
4,082,686	-		LU632_RS21355	0.36	+1.1
4,082,755	+		LU632_RS21355	0.41	-0.3
4,082,755	+		LU632_RS21355	0.41	-0.9
4,082,755	+		LU632_RS21355	0.41	-0.1
4,082,756	-		LU632_RS21355	0.41	-0.1
4,082,756	-		LU632_RS21355	0.41	+2.1
4,082,756	-		LU632_RS21355	0.41	-2.5
4,082,756	-		LU632_RS21355	0.41	-0.2
4,082,757	+		LU632_RS21355	0.42	+1.1
4,082,757	+		LU632_RS21355	0.42	+0.1
4,082,757	+		LU632_RS21355	0.42	-0.1
4,082,875	+		LU632_RS21355	0.50	-1.9
4,082,875	+		LU632_RS21355	0.50	+1.8
4,082,876	-		LU632_RS21355	0.50	+2.2
4,082,876	-		LU632_RS21355	0.50	+0.7
4,082,876	-		LU632_RS21355	0.50	+0.3
4,082,973	+		LU632_RS21355	0.57	+0.4
4,083,020	-		LU632_RS21355	0.61	-0.3