Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20920

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,996,563	+		LU632_RS20910	0.87	-2.4
3,996,649	+				+0.5
3,997,500	-				-0.3
3,997,569	-		LU632_RS20920	0.23	-1.3
3,997,577	+		LU632_RS20920	0.25	+3.5
3,997,718	+		LU632_RS20920	0.56	+0.4
3,997,719	-		LU632_RS20920	0.56	-1.2
3,997,719	-		LU632_RS20920	0.56	-1.2
3,997,721	+		LU632_RS20920	0.56	+2.6
3,997,721	+		LU632_RS20920	0.56	-1.0
3,997,721	+		LU632_RS20920	0.56	-0.7
3,997,721	+		LU632_RS20920	0.56	+2.7
3,997,721	+		LU632_RS20920	0.56	-1.9
3,997,721	+		LU632_RS20920	0.56	+0.2
3,997,722	-		LU632_RS20920	0.56	+1.0
3,997,722	-		LU632_RS20920	0.56	+1.4
3,997,722	-		LU632_RS20920	0.56	-2.1
3,997,722	-		LU632_RS20920	0.56	+0.5
3,997,782	+		LU632_RS20920	0.69	-0.3
3,997,802	+		LU632_RS20920	0.74	-1.2
3,997,850	+		LU632_RS20920	0.84	-1.6
3,997,869	-		LU632_RS20920	0.88	+4.3
3,997,898	+				+2.1
3,997,899	-				-0.6
3,997,923	+				-0.4
3,997,923	+				-0.2
3,997,930	+				-0.1
3,997,930	+				-0.5
3,997,931	-				-0.9
3,997,937	+				-1.9
3,997,937	+				+2.7
3,997,937	+				+0.4
3,997,937	+				+0.2
3,997,937	+				+2.4
3,997,938	-				-1.8
3,997,938	-				-0.0
3,997,938	-				+0.8
3,997,952	-				-0.9
3,997,955	+				-1.5
3,997,956	-				-0.4
3,998,053	-				+0.1
3,998,084	-				-0.1
3,998,084	-				-0.4
3,998,158	+				+0.3
3,998,181	+				-0.2
3,998,182	-				+1.2
3,998,211	+		LU632_RS20925	0.13	+0.4
3,998,234	+		LU632_RS20925	0.17	+0.1
3,998,234	+		LU632_RS20925	0.17	-2.0
3,998,234	+		LU632_RS20925	0.17	-1.8
3,998,266	-		LU632_RS20925	0.24	+0.5
3,998,277	-		LU632_RS20925	0.26	-2.0
3,998,277	-		LU632_RS20925	0.26	-0.4
3,998,338	+		LU632_RS20925	0.38	+1.1
3,998,364	+		LU632_RS20925	0.43	-0.2
3,998,364	+		LU632_RS20925	0.43	+1.0
3,998,369	+		LU632_RS20925	0.44	-0.2
3,998,369	+		LU632_RS20925	0.44	+2.4
3,998,370	-		LU632_RS20925	0.44	-0.4
3,998,440	+		LU632_RS20925	0.58	+1.7
3,998,487	-		LU632_RS20925	0.68	+1.7
3,998,535	+		LU632_RS20925	0.77	+2.9
3,998,685	-				+1.1
3,998,685	-				+0.6
3,998,685	-				-0.5
3,998,739	-				+1.6
3,998,739	-				-1.1