Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20070

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,823,107	-	hrpB	LU632_RS20065	0.66	-2.0
3,823,211	-	hrpB	LU632_RS20065	0.70	-0.5
3,823,623	+	hrpB	LU632_RS20065	0.87	-0.5
3,823,624	-	hrpB	LU632_RS20065	0.87	-0.6
3,823,640	+	hrpB	LU632_RS20065	0.87	-0.4
3,823,788	+				-0.3
3,823,872	-				-1.6
3,823,872	-				-1.9
3,823,953	-				-1.0
3,823,990	+				-0.5
3,823,990	+				-0.5
3,823,991	-				+0.1
3,824,083	+	thpR	LU632_RS20070	0.11	+0.1
3,824,083	+	thpR	LU632_RS20070	0.11	-2.3
3,824,083	+	thpR	LU632_RS20070	0.11	+0.1
3,824,203	-	thpR	LU632_RS20070	0.33	-0.2
3,824,398	+	thpR	LU632_RS20070	0.69	+1.3
3,824,399	-	thpR	LU632_RS20070	0.69	+2.0
3,824,466	-	thpR	LU632_RS20070	0.82	-3.0
3,824,485	-	thpR	LU632_RS20070	0.85	-0.5
3,824,519	+				-0.6
3,824,521	+				+0.2
3,824,521	+				+2.4
3,824,521	+				-0.2
3,824,522	-				-0.6
3,824,667	+	sfsA	LU632_RS20075	0.15	-1.3
3,824,717	-	sfsA	LU632_RS20075	0.22	-0.6
3,824,799	+	sfsA	LU632_RS20075	0.34	-2.1
3,824,803	-	sfsA	LU632_RS20075	0.34	-1.1
3,824,825	+	sfsA	LU632_RS20075	0.38	+4.7
3,824,897	-	sfsA	LU632_RS20075	0.48	+0.4
3,824,956	+	sfsA	LU632_RS20075	0.56	-0.9
3,824,956	+	sfsA	LU632_RS20075	0.56	+0.6
3,824,958	+	sfsA	LU632_RS20075	0.56	+1.4
3,825,123	+	sfsA	LU632_RS20075	0.80	+0.6
3,825,151	+	sfsA	LU632_RS20075	0.84	-1.4
3,825,202	+				-0.4
3,825,204	+				+0.9
3,825,204	+				+0.1
3,825,204	+				-2.9
3,825,234	-				-1.2
3,825,234	-				+1.7
3,825,262	+				-0.1
3,825,263	-				-0.6
3,825,263	-				-2.0
3,825,268	-				-2.5
3,825,268	-				+4.4
3,825,284	+				+0.7
3,825,312	-				+0.0
3,825,344	-				+0.8
3,825,344	-				+2.6
3,825,344	-				+2.4
3,825,344	-				+1.8
3,825,389	+				+2.4