Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19785

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,757,921	-		LU632_RS19780	0.19	-2.2
3,757,971	+		LU632_RS19780	0.23	-0.8
3,757,972	-		LU632_RS19780	0.23	-1.2
3,757,976	-		LU632_RS19780	0.24	-0.2
3,758,008	-		LU632_RS19780	0.27	-1.9
3,758,134	+		LU632_RS19780	0.38	-1.4
3,758,135	-		LU632_RS19780	0.38	-3.4
3,758,203	-		LU632_RS19780	0.44	+0.1
3,758,214	-		LU632_RS19780	0.45	-0.4
3,758,373	+		LU632_RS19780	0.60	-2.2
3,758,374	-		LU632_RS19780	0.60	-2.2
3,758,374	-		LU632_RS19780	0.60	-2.8
3,758,374	-		LU632_RS19780	0.60	-2.2
3,758,385	+		LU632_RS19780	0.61	-1.1
3,758,386	-		LU632_RS19780	0.61	-1.0
3,758,397	+		LU632_RS19780	0.62	-1.1
3,758,397	+		LU632_RS19780	0.62	-2.8
3,758,443	+		LU632_RS19780	0.66	-2.5
3,758,443	+		LU632_RS19780	0.66	-2.3
3,758,443	+		LU632_RS19780	0.66	-0.2
3,758,447	+		LU632_RS19780	0.67	-1.8
3,758,447	+		LU632_RS19780	0.67	-2.9
3,758,447	+		LU632_RS19780	0.67	+0.6
3,758,448	-		LU632_RS19780	0.67	-2.2
3,758,484	+		LU632_RS19780	0.70	-3.7
3,758,520	-		LU632_RS19780	0.73	+1.4
3,758,548	-		LU632_RS19780	0.76	-0.6
3,758,616	+		LU632_RS19780	0.82	-2.0
3,758,651	+		LU632_RS19780	0.85	-0.2
3,758,651	+		LU632_RS19780	0.85	-2.1
3,758,652	-		LU632_RS19780	0.85	-1.2
3,758,655	+		LU632_RS19780	0.85	-0.8
3,758,697	+		LU632_RS19780	0.89	-1.2
3,758,697	+		LU632_RS19780	0.89	-2.7
3,758,698	-		LU632_RS19780	0.89	+0.8
3,758,698	-		LU632_RS19780	0.89	-2.2
3,758,714	-				-3.3
3,758,741	+				+1.0
3,758,742	-				-2.4
3,758,774	-				-3.0
3,758,774	-				-2.4
3,758,819	+				-2.4
3,758,820	-				-3.3
3,758,837	-				-3.0
3,758,841	-				-1.3
3,758,841	-				-2.2
3,758,892	+				-1.0
3,758,909	-				+0.4
3,758,999	+		LU632_RS19785	0.19	-1.0
3,759,002	+		LU632_RS19785	0.19	+0.4
3,759,003	-		LU632_RS19785	0.19	-1.6
3,759,003	-		LU632_RS19785	0.19	+0.8
3,759,032	+		LU632_RS19785	0.23	+1.4
3,759,032	+		LU632_RS19785	0.23	-3.1
3,759,032	+		LU632_RS19785	0.23	-2.4
3,759,032	+		LU632_RS19785	0.23	-1.5
3,759,032	+		LU632_RS19785	0.23	+0.8
3,759,032	+		LU632_RS19785	0.23	-2.2
3,759,032	+		LU632_RS19785	0.23	-2.5
3,759,033	-		LU632_RS19785	0.24	-1.2
3,759,033	-		LU632_RS19785	0.24	-0.6
3,759,033	-		LU632_RS19785	0.24	-0.8
3,759,033	-		LU632_RS19785	0.24	-2.0
3,759,033	-		LU632_RS19785	0.24	+0.4
3,759,033	-		LU632_RS19785	0.24	-3.7
3,759,074	+		LU632_RS19785	0.29	-1.9
3,759,179	+		LU632_RS19785	0.44	+0.8
3,759,189	-		LU632_RS19785	0.45	-1.0
3,759,223	+		LU632_RS19785	0.50	-1.1
3,759,236	+		LU632_RS19785	0.52	+1.2
3,759,237	-		LU632_RS19785	0.52	-2.5
3,759,237	-		LU632_RS19785	0.52	-5.2
3,759,239	-		LU632_RS19785	0.52	+0.4
3,759,255	-		LU632_RS19785	0.54	-1.7
3,759,377	-		LU632_RS19785	0.71	-3.5
3,759,386	-		LU632_RS19785	0.72	-3.2
3,759,386	-		LU632_RS19785	0.72	-4.4
3,759,598	-				-2.6
3,759,609	+				+3.2
3,759,661	-				+0.4
3,759,668	-				-2.3
3,759,777	+				+3.4
3,759,777	+				-2.5
3,759,777	+				+0.1
3,759,860	-				-0.4
3,759,941	-				+1.6
3,759,942	-				+1.5
3,759,942	-				+2.0
3,759,942	-				+0.4
3,759,945	+				-0.4
3,759,946	-				-1.7
3,760,006	-				+1.4
3,760,006	-				+4.7
3,760,037	+				+0.5
3,760,165	+		LU632_RS19790	0.31	-0.3
3,760,198	+		LU632_RS19790	0.37	+1.2
3,760,198	+		LU632_RS19790	0.37	-1.1
3,760,217	-		LU632_RS19790	0.40	-2.1
3,760,324	+		LU632_RS19790	0.58	-1.4
3,760,324	+		LU632_RS19790	0.58	+0.1
3,760,324	+		LU632_RS19790	0.58	+0.0
3,760,324	+		LU632_RS19790	0.58	+1.8
3,760,324	+		LU632_RS19790	0.58	+2.4
3,760,325	-		LU632_RS19790	0.59	-1.0
3,760,396	+		LU632_RS19790	0.71	+0.2
3,760,396	+		LU632_RS19790	0.71	-1.2
3,760,397	-		LU632_RS19790	0.71	-1.0
3,760,397	-		LU632_RS19790	0.71	-1.0
3,760,427	-		LU632_RS19790	0.76	+0.4
3,760,526	-				-1.0
3,760,526	-				-0.8
3,760,526	-				+0.6
3,760,584	-				-0.4