Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19770

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,754,559	+	lpxP	LU632_RS19765	0.43	+0.0
3,754,640	-	lpxP	LU632_RS19765	0.52	+0.3
3,754,787	-	lpxP	LU632_RS19765	0.68	-1.1
3,754,879	+	lpxP	LU632_RS19765	0.78	-2.8
3,754,879	+	lpxP	LU632_RS19765	0.78	-2.0
3,754,941	+	lpxP	LU632_RS19765	0.85	+0.4
3,754,974	+	lpxP	LU632_RS19765	0.88	+2.4
3,754,975	-	lpxP	LU632_RS19765	0.88	+1.4
3,754,976	+	lpxP	LU632_RS19765	0.88	-0.2
3,754,977	-	lpxP	LU632_RS19765	0.89	+0.0
3,755,022	+				-1.1
3,755,023	-				+0.2
3,755,023	-				-0.2
3,755,023	-				-0.6
3,755,023	-				-1.4
3,755,024	+				+0.5
3,755,024	+				-1.0
3,755,024	+				+0.5
3,755,024	+				-1.1
3,755,024	+				-0.1
3,755,024	+				-0.1
3,755,024	+				+1.4
3,755,024	+				-0.2
3,755,025	-				+0.9
3,755,025	-				-2.4
3,755,025	-				-3.0
3,755,025	-				+0.2
3,755,025	-				+1.6
3,755,080	-				+0.3
3,755,080	-				-1.5
3,755,144	+				-0.2
3,755,146	+				+1.5
3,755,244	-				-2.0
3,755,275	-				-1.9
3,755,362	+				-0.5
3,755,408	+				-1.7
3,755,409	-				+0.0
3,755,605	+		LU632_RS19770	0.18	-1.2
3,755,605	+		LU632_RS19770	0.18	-3.4
3,755,606	-		LU632_RS19770	0.18	-2.3
3,755,606	-		LU632_RS19770	0.18	-2.9
3,755,606	-		LU632_RS19770	0.18	+0.8
3,755,656	+		LU632_RS19770	0.23	-2.3
3,755,717	+		LU632_RS19770	0.29	-1.5
3,755,733	-		LU632_RS19770	0.30	-3.4
3,755,791	-		LU632_RS19770	0.36	-2.5
3,755,793	+		LU632_RS19770	0.36	-2.7
3,755,924	+		LU632_RS19770	0.49	-0.2
3,755,934	+		LU632_RS19770	0.50	-0.9
3,755,934	+		LU632_RS19770	0.50	-1.8
3,755,934	+		LU632_RS19770	0.50	-1.4
3,755,935	-		LU632_RS19770	0.50	-2.4
3,755,937	-		LU632_RS19770	0.50	-2.2
3,756,028	-		LU632_RS19770	0.59	-3.2
3,756,028	-		LU632_RS19770	0.59	-0.2
3,756,065	+		LU632_RS19770	0.63	-4.2
3,756,066	-		LU632_RS19770	0.63	-1.2
3,756,066	-		LU632_RS19770	0.63	-1.7
3,756,074	-		LU632_RS19770	0.64	-2.8
3,756,136	-		LU632_RS19770	0.70	-1.5
3,756,137	+		LU632_RS19770	0.70	-2.2
3,756,137	+		LU632_RS19770	0.70	-1.9
3,756,296	+		LU632_RS19770	0.85	-0.2
3,756,306	+		LU632_RS19770	0.86	-1.6
3,756,306	+		LU632_RS19770	0.86	-2.9
3,756,307	-		LU632_RS19770	0.86	-2.2
3,756,308	+		LU632_RS19770	0.86	-0.9
3,756,325	+		LU632_RS19770	0.88	-3.9
3,756,329	+		LU632_RS19770	0.88	-2.2
3,756,329	+		LU632_RS19770	0.88	-0.6
3,756,330	-		LU632_RS19770	0.89	-1.3
3,756,330	-		LU632_RS19770	0.89	-2.9
3,756,330	-		LU632_RS19770	0.89	-2.8
3,756,362	+				-4.0
3,756,384	-				-2.5
3,756,426	+				-2.1
3,756,439	+				-2.0
3,756,439	+				-0.7
3,756,439	+				-3.2
3,756,445	-				-3.7
3,756,475	+				-1.2
3,756,650	+		LU632_RS19775	0.11	-3.4
3,756,672	-		LU632_RS19775	0.13	-0.2
3,756,714	-		LU632_RS19775	0.17	-2.5
3,756,754	-		LU632_RS19775	0.20	-2.7
3,756,754	-		LU632_RS19775	0.20	-3.7
3,756,894	+		LU632_RS19775	0.32	-3.2
3,756,894	+		LU632_RS19775	0.32	-2.9
3,756,894	+		LU632_RS19775	0.32	-1.3
3,757,001	+		LU632_RS19775	0.41	-0.2
3,757,002	-		LU632_RS19775	0.41	-1.5
3,757,028	-		LU632_RS19775	0.43	-2.2
3,757,029	+		LU632_RS19775	0.43	-2.4
3,757,029	+		LU632_RS19775	0.43	-2.2
3,757,029	+		LU632_RS19775	0.43	-1.3
3,757,030	-		LU632_RS19775	0.43	-2.1
3,757,030	-		LU632_RS19775	0.43	-2.8
3,757,030	-		LU632_RS19775	0.43	-2.3
3,757,030	-		LU632_RS19775	0.43	-2.2
3,757,031	+		LU632_RS19775	0.43	-1.8
3,757,031	+		LU632_RS19775	0.43	-0.6
3,757,031	+		LU632_RS19775	0.43	-0.2
3,757,031	+		LU632_RS19775	0.43	-2.6
3,757,031	+		LU632_RS19775	0.43	-2.7
3,757,031	+		LU632_RS19775	0.43	-1.0
3,757,032	-		LU632_RS19775	0.44	-1.8
3,757,032	-		LU632_RS19775	0.44	-2.3
3,757,070	+		LU632_RS19775	0.47	-0.3
3,757,140	-		LU632_RS19775	0.53	-2.2
3,757,155	-		LU632_RS19775	0.54	-1.6
3,757,161	-		LU632_RS19775	0.54	-0.8
3,757,161	-		LU632_RS19775	0.54	-2.5
3,757,327	-		LU632_RS19775	0.69	-4.0
3,757,329	-		LU632_RS19775	0.69	-2.4
3,757,329	-		LU632_RS19775	0.69	-0.6
3,757,329	-		LU632_RS19775	0.69	-1.4