Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19640

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,728,735	+		LU632_RS19635	0.64	+0.2
3,728,736	-		LU632_RS19635	0.64	+0.6
3,728,755	+		LU632_RS19635	0.64	+1.3
3,728,760	-		LU632_RS19635	0.65	+1.8
3,728,760	-		LU632_RS19635	0.65	+1.2
3,728,760	-		LU632_RS19635	0.65	+0.8
3,728,760	-		LU632_RS19635	0.65	-2.0
3,728,866	-		LU632_RS19635	0.69	+0.2
3,728,866	-		LU632_RS19635	0.69	+3.6
3,728,866	-		LU632_RS19635	0.69	-2.0
3,728,868	+		LU632_RS19635	0.69	-0.1
3,729,084	+		LU632_RS19635	0.78	+0.4
3,729,111	-		LU632_RS19635	0.79	+1.3
3,729,111	-		LU632_RS19635	0.79	+0.1
3,729,228	+		LU632_RS19635	0.84	+0.8
3,729,229	-		LU632_RS19635	0.84	-1.2
3,729,229	-		LU632_RS19635	0.84	-0.7
3,729,256	+		LU632_RS19635	0.85	-0.6
3,729,323	+		LU632_RS19635	0.88	+0.6
3,729,323	+		LU632_RS19635	0.88	+0.1
3,729,323	+		LU632_RS19635	0.88	-0.9
3,729,327	-		LU632_RS19635	0.88	+0.8
3,729,332	+		LU632_RS19635	0.88	-0.0
3,729,333	-		LU632_RS19635	0.88	-0.3
3,729,354	+		LU632_RS19635	0.89	+0.1
3,729,355	-		LU632_RS19635	0.89	+0.5
3,729,355	-		LU632_RS19635	0.89	-0.2
3,729,451	-				+1.3
3,729,508	+				+0.3
3,729,509	-				+0.2
3,729,575	+				-0.3
3,729,621	+				-0.8
3,729,697	+				-1.2
3,729,698	-				-2.7
3,729,782	-	metB	LU632_RS19640	0.14	-2.5
3,729,817	+	metB	LU632_RS19640	0.17	-1.8
3,729,912	-	metB	LU632_RS19640	0.25	-0.5
3,729,955	-	metB	LU632_RS19640	0.29	-1.6
3,729,955	-	metB	LU632_RS19640	0.29	+0.4
3,729,955	-	metB	LU632_RS19640	0.29	-3.0
3,729,988	-	metB	LU632_RS19640	0.32	-0.2
3,730,042	+	metB	LU632_RS19640	0.36	-0.5
3,730,059	-	metB	LU632_RS19640	0.38	+0.8
3,730,065	+	metB	LU632_RS19640	0.38	-2.7
3,730,066	-	metB	LU632_RS19640	0.38	-0.4
3,730,274	+	metB	LU632_RS19640	0.56	-1.0
3,730,301	-	metB	LU632_RS19640	0.59	-1.9
3,730,301	-	metB	LU632_RS19640	0.59	-2.6
3,730,478	+	metB	LU632_RS19640	0.74	-3.8
3,730,681	+				-4.0
3,730,683	+				+1.4
3,730,684	-				+0.7
3,730,684	-				-2.4
3,730,684	-				-1.4
3,730,684	-				+1.7
3,730,727	+				-1.4
3,730,727	+				-4.1
3,730,728	-				+0.0
3,730,772	-				+0.0
3,730,807	+				-3.7
3,730,808	-				-0.5
3,730,808	-				+1.9
3,730,808	-				-1.4
3,730,834	+				-0.1
3,730,908	+				-2.7
3,730,908	+				+1.0
3,730,909	-				-2.6
3,730,911	+				+1.1
3,730,911	+				+0.8
3,730,911	+				-0.2
3,730,941	-				+0.0
3,730,973	+				-2.1
3,731,014	-				-2.1
3,731,045	+				-1.3
3,731,048	-				-1.3
3,731,048	-				-1.7
3,731,170	-	metJ	LU632_RS19645	0.46	-2.4
3,731,543	-				-0.4
3,731,577	+				+0.0
3,731,577	+				+0.0
3,731,577	+				+0.3
3,731,577	+				+0.2
3,731,577	+				-0.5
3,731,577	+				-0.7
3,731,578	-				-0.1
3,731,578	-				-1.0
3,731,578	-				-1.3
3,731,578	-				+1.0
3,731,578	-				+0.4
3,731,578	-				-2.1
3,731,579	+				-1.7
3,731,609	+				-1.7
3,731,609	+				+0.4
3,731,610	-				+0.0
3,731,610	-				-2.4
3,731,610	-				+1.0
3,731,614	+				-1.0
3,731,615	-				+0.1
3,731,649	+				+0.6
3,731,649	+				-0.4
3,731,649	+				+0.7
3,731,650	-				-0.7
3,731,681	-				+0.2
3,731,681	-				+1.0
3,731,685	+				+0.4
3,731,686	-				-2.9