Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19490

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,691,179	+				+3.3
3,691,208	+				-1.9
3,691,255	+				-0.4
3,691,255	+				+0.8
3,691,311	-		LU632_RS19485	0.13	-0.7
3,691,341	-		LU632_RS19485	0.17	+0.8
3,691,379	+		LU632_RS19485	0.21	+0.3
3,691,439	+		LU632_RS19485	0.28	+1.2
3,691,440	-		LU632_RS19485	0.29	-1.8
3,691,440	-		LU632_RS19485	0.29	-2.0
3,691,632	-		LU632_RS19485	0.51	-1.1
3,691,697	+		LU632_RS19485	0.59	+0.1
3,691,704	+		LU632_RS19485	0.60	-0.4
3,691,772	+		LU632_RS19485	0.68	+0.7
3,691,927	+		LU632_RS19485	0.86	-1.8
3,691,928	-		LU632_RS19485	0.86	-0.6
3,691,981	+				+0.6
3,692,243	+	rnz	LU632_RS19490	0.18	-0.3
3,692,243	+	rnz	LU632_RS19490	0.18	+0.4
3,692,243	+	rnz	LU632_RS19490	0.18	-0.8
3,692,244	-	rnz	LU632_RS19490	0.18	+0.5
3,692,394	-	rnz	LU632_RS19490	0.34	+0.1
3,692,410	-	rnz	LU632_RS19490	0.36	-1.7
3,692,621	+	rnz	LU632_RS19490	0.59	+2.4
3,692,622	-	rnz	LU632_RS19490	0.59	+0.6
3,692,622	-	rnz	LU632_RS19490	0.59	+0.6
3,692,743	+	rnz	LU632_RS19490	0.72	+0.2
3,692,791	+	rnz	LU632_RS19490	0.78	-0.1
3,692,791	+	rnz	LU632_RS19490	0.78	-1.4
3,692,792	-	rnz	LU632_RS19490	0.78	+0.0
3,692,858	-	rnz	LU632_RS19490	0.85	-0.6
3,692,925	-				+1.4
3,692,932	+				+0.7
3,693,034	-				+0.8
3,693,108	-				-1.3
3,693,112	+				+1.4
3,693,446	+	gorA	LU632_RS19495	0.22	-1.1
3,693,682	+	gorA	LU632_RS19495	0.39	-0.8