Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19105

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,603,906	+				+1.3
3,603,930	-				-1.8
3,603,936	+				+0.6
3,603,957	-				-0.7
3,604,000	-				-0.8
3,604,514	+		LU632_RS19100	0.23	+6.2
3,604,574	-		LU632_RS19100	0.62	+1.5
3,604,574	-		LU632_RS19100	0.62	-1.6
3,604,675	+				-0.7
3,604,826	+				-0.8
3,604,828	+				+0.4
3,604,828	+				+1.7
3,604,828	+				+1.0
3,604,828	+				-0.3
3,604,829	-				-1.8
3,604,832	+				-2.0
3,604,869	-				-0.8
3,604,869	-				+2.3
3,604,869	-				-0.8
3,605,063	+				-0.2
3,605,093	+				+0.1
3,605,112	-				-0.3
3,605,150	-				+0.8
3,605,164	+				+0.5
3,605,237	-				-0.7
3,605,274	-				+1.1
3,605,348	-				+0.3
3,605,411	-				-0.9
3,605,450	-				+0.3
3,605,548	+				+0.1
3,605,628	+				-1.6
3,605,628	+				+1.0
3,605,628	+				+3.6
3,605,629	-				-1.0
3,605,629	-				-0.8
3,605,662	+		LU632_RS19110	0.13	+2.3
3,605,662	+		LU632_RS19110	0.13	-1.1
3,605,682	+		LU632_RS19110	0.18	-1.2
3,605,743	-		LU632_RS19110	0.32	-0.2
3,605,774	-		LU632_RS19110	0.39	-3.1
3,605,870	+		LU632_RS19110	0.60	-3.3
3,605,870	+		LU632_RS19110	0.60	+0.4
3,605,870	+		LU632_RS19110	0.60	-0.1
3,605,870	+		LU632_RS19110	0.60	-3.0
3,605,871	-		LU632_RS19110	0.60	-0.7
3,605,871	-		LU632_RS19110	0.60	+0.6
3,605,871	-		LU632_RS19110	0.60	-2.9
3,605,897	-		LU632_RS19110	0.66	-0.7
3,605,977	+		LU632_RS19110	0.84	-0.7