Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18725

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,536,971	-		LU632_RS18720	0.40	+0.2
3,536,979	+		LU632_RS18720	0.41	+0.1
3,537,084	-		LU632_RS18720	0.49	+2.7
3,537,386	+		LU632_RS18720	0.72	+1.0
3,537,410	+		LU632_RS18720	0.74	+0.0
3,537,411	-		LU632_RS18720	0.74	+1.6
3,537,615	+		LU632_RS18720	0.89	-0.2
3,537,625	-		LU632_RS18720	0.90	+1.2
3,537,672	+				+0.4
3,537,672	+				+0.0
3,537,673	-				+0.6
3,537,673	-				+0.0
3,537,680	+				+0.8
3,537,681	-				-0.4
3,537,790	+				+0.8
3,537,805	+				+0.2
3,537,837	+				-0.3
3,537,838	-				+1.6
3,537,959	-		LU632_RS18725	0.14	+1.1
3,538,236	+		LU632_RS18725	0.31	+0.5
3,538,236	+		LU632_RS18725	0.31	+0.1
3,538,257	+		LU632_RS18725	0.32	-1.8
3,538,257	+		LU632_RS18725	0.32	-1.0
3,538,257	+		LU632_RS18725	0.32	+0.3
3,538,257	+		LU632_RS18725	0.32	+0.4
3,538,257	+		LU632_RS18725	0.32	-0.9
3,538,257	+		LU632_RS18725	0.32	-0.8
3,538,257	+		LU632_RS18725	0.32	-0.5
3,538,257	+		LU632_RS18725	0.32	-0.1
3,538,257	+		LU632_RS18725	0.32	-0.5
3,538,421	-		LU632_RS18725	0.43	+0.2
3,538,421	-		LU632_RS18725	0.43	+1.1
3,539,135	+		LU632_RS18725	0.88	-3.9
3,539,579	+		LU632_RS18730	0.17	-0.7
3,539,579	+		LU632_RS18730	0.17	+0.3
3,539,603	+		LU632_RS18730	0.18	-2.3
3,539,639	-		LU632_RS18730	0.21	+0.5
3,539,758	-		LU632_RS18730	0.28	+2.5
3,540,075	+		LU632_RS18730	0.48	+0.1
3,540,076	-		LU632_RS18730	0.49	-0.5
3,540,076	-		LU632_RS18730	0.49	+0.5
3,540,076	-		LU632_RS18730	0.49	-0.7
3,540,077	+		LU632_RS18730	0.49	-2.5
3,540,077	+		LU632_RS18730	0.49	-2.1
3,540,077	+		LU632_RS18730	0.49	+0.0
3,540,078	-		LU632_RS18730	0.49	-0.3
3,540,107	+		LU632_RS18730	0.51	-0.2
3,540,107	+		LU632_RS18730	0.51	+0.5
3,540,107	+		LU632_RS18730	0.51	-3.1
3,540,107	+		LU632_RS18730	0.51	+0.0
3,540,107	+		LU632_RS18730	0.51	+0.3
3,540,107	+		LU632_RS18730	0.51	-0.0
3,540,107	+		LU632_RS18730	0.51	-0.5
3,540,108	-		LU632_RS18730	0.51	+0.0
3,540,108	-		LU632_RS18730	0.51	-0.6
3,540,108	-		LU632_RS18730	0.51	+1.5
3,540,108	-		LU632_RS18730	0.51	-0.5
3,540,108	-		LU632_RS18730	0.51	+0.5
3,540,110	+		LU632_RS18730	0.51	+2.6
3,540,110	+		LU632_RS18730	0.51	+0.1
3,540,111	-		LU632_RS18730	0.51	-0.5