Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18500

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,496,331	+				-0.5
3,496,361	-				-0.8
3,496,361	-				+1.4
3,496,433	+				+0.2
3,496,436	+				-2.3
3,496,437	-				-0.8
3,496,473	+				-1.4
3,496,592	+				-0.6
3,496,593	-				+1.6
3,496,644	-				+0.2
3,496,788	+				+2.3
3,496,799	+				+0.2
3,496,800	-				-0.7
3,496,865	+				+0.2
3,496,866	-				-2.5
3,496,869	+				-0.2
3,496,870	-				-1.7
3,497,023	-	tgt	LU632_RS18500	0.15	-1.4
3,497,067	-	tgt	LU632_RS18500	0.19	+3.5
3,497,209	-	tgt	LU632_RS18500	0.32	-2.5
3,497,286	+	tgt	LU632_RS18500	0.39	+0.3
3,497,724	+	tgt	LU632_RS18500	0.78	-1.3
3,497,725	-	tgt	LU632_RS18500	0.78	-0.3
3,497,779	+	tgt	LU632_RS18500	0.82	+0.7
3,497,780	-	tgt	LU632_RS18500	0.82	+0.3
3,497,841	+	tgt	LU632_RS18500	0.88	-1.3
3,497,842	-	tgt	LU632_RS18500	0.88	-2.2
3,497,844	+	tgt	LU632_RS18500	0.88	+0.8
3,497,845	-	tgt	LU632_RS18500	0.88	-3.6
3,497,907	+				+0.7
3,498,177	+	yajC	LU632_RS18505	0.52	-1.0