Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panE and yajL overlap by 41 nucleotides yajL and LU632_RS18465 are separated by 107 nucleotides
LU632_RS18455: panE - 2-dehydropantoate 2-reductase, at 3,487,758 to 3,488,678
panE
LU632_RS18460: yajL - protein deglycase YajL, at 3,488,638 to 3,489,228
yajL
LU632_RS18465: LU632_RS18465 - IS256 family transposase, at 3,489,336 to 3,490,544
_RS18465
Position (kb) 3488
3489
3490 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3487.661 kb on + strand at 3487.662 kb on - strand at 3487.696 kb on - strand at 3487.716 kb on + strand at 3487.728 kb on - strand at 3487.729 kb on + strand at 3487.730 kb on - strand at 3487.730 kb on - strand at 3487.730 kb on - strand at 3487.925 kb on + strand, within panE at 3488.042 kb on - strand, within panE at 3488.042 kb on - strand, within panE at 3488.042 kb on - strand, within panE at 3488.172 kb on - strand, within panE at 3488.259 kb on - strand, within panE at 3488.325 kb on + strand, within panE at 3488.325 kb on + strand, within panE at 3488.325 kb on + strand, within panE at 3488.440 kb on + strand, within panE at 3488.441 kb on - strand, within panE at 3488.445 kb on + strand, within panE at 3488.445 kb on + strand, within panE at 3488.533 kb on - strand, within panE at 3488.533 kb on - strand, within panE at 3488.534 kb on + strand, within panE at 3488.534 kb on + strand, within panE at 3488.535 kb on - strand, within panE at 3488.544 kb on + strand, within panE at 3488.612 kb on + strand at 3488.708 kb on + strand, within yajL at 3488.708 kb on + strand, within yajL at 3489.003 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.036 kb on + strand, within yajL at 3489.141 kb on + strand, within yajL at 3489.141 kb on + strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.159 kb on + strand, within yajL at 3489.226 kb on + strand at 3489.227 kb on - strand at 3489.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS) remove 3,487,661 + +3.8 3,487,662 - -1.0 3,487,696 - -2.4 3,487,716 + +2.9 3,487,728 - -1.6 3,487,729 + -0.2 3,487,730 - +0.1 3,487,730 - -1.3 3,487,730 - -1.2 3,487,925 + panE LU632_RS18455 0.18 +0.5 3,488,042 - panE LU632_RS18455 0.31 -1.0 3,488,042 - panE LU632_RS18455 0.31 -1.2 3,488,042 - panE LU632_RS18455 0.31 -0.1 3,488,172 - panE LU632_RS18455 0.45 -1.2 3,488,259 - panE LU632_RS18455 0.54 -1.3 3,488,325 + panE LU632_RS18455 0.62 +0.3 3,488,325 + panE LU632_RS18455 0.62 -1.7 3,488,325 + panE LU632_RS18455 0.62 -1.9 3,488,440 + panE LU632_RS18455 0.74 -0.9 3,488,441 - panE LU632_RS18455 0.74 -2.2 3,488,445 + panE LU632_RS18455 0.75 -0.7 3,488,445 + panE LU632_RS18455 0.75 -0.1 3,488,533 - panE LU632_RS18455 0.84 +2.3 3,488,533 - panE LU632_RS18455 0.84 -1.4 3,488,534 + panE LU632_RS18455 0.84 -2.8 3,488,534 + panE LU632_RS18455 0.84 -1.7 3,488,535 - panE LU632_RS18455 0.84 -1.1 3,488,544 + panE LU632_RS18455 0.85 -3.8 3,488,612 + -1.1 3,488,708 + yajL LU632_RS18460 0.12 -1.8 3,488,708 + yajL LU632_RS18460 0.12 -0.8 3,489,003 + yajL LU632_RS18460 0.62 -0.4 3,489,006 + yajL LU632_RS18460 0.62 -3.3 3,489,006 + yajL LU632_RS18460 0.62 -1.2 3,489,006 + yajL LU632_RS18460 0.62 +3.3 3,489,006 + yajL LU632_RS18460 0.62 +0.5 3,489,036 + yajL LU632_RS18460 0.67 +1.6 3,489,141 + yajL LU632_RS18460 0.85 +0.7 3,489,141 + yajL LU632_RS18460 0.85 -1.7 3,489,142 - yajL LU632_RS18460 0.85 +0.7 3,489,142 - yajL LU632_RS18460 0.85 +0.3 3,489,142 - yajL LU632_RS18460 0.85 +0.9 3,489,159 + yajL LU632_RS18460 0.88 +1.0 3,489,226 + -0.8 3,489,227 - +1.9 3,489,273 - -1.0
Or see this region's nucleotide sequence