Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18040

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,407,146	+				+0.6
3,407,156	-				+0.2
3,407,176	-				-0.2
3,407,183	-				+0.5
3,407,185	+				-0.4
3,407,202	+				-0.9
3,407,263	+				+0.3
3,407,299	+				-1.0
3,407,300	-				-0.4
3,407,499	+		LU632_RS18030	0.65	-0.7
3,407,603	+				-1.6
3,407,606	+				+0.3
3,407,606	+				-2.0
3,407,606	+				-2.2
3,407,607	-				-0.0
3,407,608	+				+0.5
3,407,609	-				-0.8
3,407,617	+				-0.2
3,407,617	+				-0.3
3,407,853	+				-1.2
3,407,863	-				+0.2
3,407,943	-				-0.4
3,408,023	+				+2.2
3,408,023	+				-1.5
3,408,081	+				-0.8
3,408,087	-				+0.3
3,408,126	-		LU632_RS18040	0.17	+1.0
3,408,127	+		LU632_RS18040	0.17	-1.4
3,408,128	-		LU632_RS18040	0.18	+0.2
3,408,199	-		LU632_RS18040	0.34	-1.1
3,408,202	+		LU632_RS18040	0.34	+0.5
3,408,202	+		LU632_RS18040	0.34	-0.6
3,408,203	-		LU632_RS18040	0.34	+0.8
3,408,352	+		LU632_RS18040	0.68	+1.5
3,408,922	+		LU632_RS18045	0.74	-0.0