Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18015

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,404,127	-				+1.1
3,404,164	-				+0.4
3,404,168	-				-0.6
3,404,478	+				+1.2
3,404,528	+				+0.5
3,404,529	-				-1.1
3,404,546	+				+0.4
3,404,702	-				+0.1
3,404,783	+				+1.3
3,404,783	+				-2.4
3,404,784	-				+0.1
3,404,867	-				+0.9
3,405,112	-		LU632_RS18015	0.11	-0.2
3,405,112	-		LU632_RS18015	0.11	+0.2
3,405,204	+		LU632_RS18015	0.34	+1.1
3,405,205	-		LU632_RS18015	0.34	-0.3
3,405,281	+		LU632_RS18015	0.53	-0.8
3,405,452	-				+1.0
3,405,456	+				-1.1
3,405,507	-				+1.1
3,405,507	-				+0.5
3,405,537	-				-2.0
3,405,656	+				-1.1
3,405,906	-		LU632_RS18020	0.32	+0.9