Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17330

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,257,240	+	fruB	LU632_RS17325	0.38	+1.2
3,257,477	+	fruB	LU632_RS17325	0.59	-2.4
3,257,606	+	fruB	LU632_RS17325	0.70	-1.6
3,257,607	-	fruB	LU632_RS17325	0.70	-1.5
3,257,650	-	fruB	LU632_RS17325	0.74	-3.0
3,257,665	+	fruB	LU632_RS17325	0.75	-0.9
3,257,726	+	fruB	LU632_RS17325	0.81	-1.9
3,257,726	+	fruB	LU632_RS17325	0.81	-0.6
3,257,730	+	fruB	LU632_RS17325	0.81	-2.5
3,257,788	+	fruB	LU632_RS17325	0.86	+0.2
3,257,788	+	fruB	LU632_RS17325	0.86	-2.9
3,257,789	-	fruB	LU632_RS17325	0.86	-3.0
3,257,792	+	fruB	LU632_RS17325	0.86	+2.2
3,257,792	+	fruB	LU632_RS17325	0.86	-2.9
3,257,792	+	fruB	LU632_RS17325	0.86	+0.6
3,257,792	+	fruB	LU632_RS17325	0.86	-2.4
3,257,830	+	fruB	LU632_RS17325	0.90	-3.3
3,257,831	-	fruB	LU632_RS17325	0.90	-4.2
3,257,837	+				-2.8
3,257,842	-				-3.8
3,257,945	+				-4.3
3,257,945	+				-2.2
3,257,945	+				-0.1
3,257,946	-				-1.7
3,257,946	-				-1.6
3,257,946	-				-3.4
3,257,946	-				-2.5
3,257,946	-				-0.7
3,258,073	-				-1.2
3,258,237	-				+0.6
3,258,241	+				-1.4
3,258,313	-		LU632_RS17330	0.17	+0.1
3,258,313	-		LU632_RS17330	0.17	-1.5
3,258,313	-		LU632_RS17330	0.17	+1.9
3,258,422	-		LU632_RS17330	0.37	-0.6
3,258,425	+		LU632_RS17330	0.38	-0.6
3,258,456	+		LU632_RS17330	0.44	+0.4
3,258,458	+		LU632_RS17330	0.44	+0.5
3,258,504	+		LU632_RS17330	0.53	+1.7
3,258,552	-		LU632_RS17330	0.62	+0.1
3,258,642	+		LU632_RS17330	0.79	-2.1
3,258,642	+		LU632_RS17330	0.79	-1.3
3,258,643	-		LU632_RS17330	0.79	-1.0
3,258,646	+		LU632_RS17330	0.79	+0.1
3,258,647	-		LU632_RS17330	0.80	+0.1
3,258,690	+		LU632_RS17330	0.88	+2.2
3,259,597	-				-0.9
3,259,597	-				+1.5