Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16820

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,167,193	+	nrdF	LU632_RS16815	0.38	+1.2
3,167,193	+	nrdF	LU632_RS16815	0.38	-1.1
3,167,193	+	nrdF	LU632_RS16815	0.38	+2.4
3,167,193	+	nrdF	LU632_RS16815	0.38	+0.8
3,167,194	-	nrdF	LU632_RS16815	0.38	+1.9
3,167,229	-	nrdF	LU632_RS16815	0.42	-1.3
3,167,229	-	nrdF	LU632_RS16815	0.42	-1.3
3,167,229	-	nrdF	LU632_RS16815	0.42	-0.8
3,167,229	-	nrdF	LU632_RS16815	0.42	+0.1
3,167,254	-	nrdF	LU632_RS16815	0.44	+0.6
3,167,257	-	nrdF	LU632_RS16815	0.44	+2.4
3,167,317	-	nrdF	LU632_RS16815	0.51	-1.4
3,167,328	+	nrdF	LU632_RS16815	0.52	+0.5
3,167,410	+	nrdF	LU632_RS16815	0.60	+0.9
3,167,418	+	nrdF	LU632_RS16815	0.61	+2.0
3,167,421	+	nrdF	LU632_RS16815	0.62	-0.9
3,167,421	+	nrdF	LU632_RS16815	0.62	-3.0
3,167,422	-	nrdF	LU632_RS16815	0.62	-0.1
3,167,422	-	nrdF	LU632_RS16815	0.62	-2.8
3,167,431	-	nrdF	LU632_RS16815	0.63	-0.4
3,167,433	-	nrdF	LU632_RS16815	0.63	-1.3
3,167,504	-	nrdF	LU632_RS16815	0.70	+1.7
3,167,513	-	nrdF	LU632_RS16815	0.71	-2.9
3,167,515	+	nrdF	LU632_RS16815	0.71	+4.8
3,167,515	+	nrdF	LU632_RS16815	0.71	+0.7
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.6
3,167,516	-	nrdF	LU632_RS16815	0.71	+1.5
3,167,516	-	nrdF	LU632_RS16815	0.71	+0.7
3,167,516	-	nrdF	LU632_RS16815	0.71	-1.4
3,167,551	-	nrdF	LU632_RS16815	0.75	-1.6
3,167,597	+	nrdF	LU632_RS16815	0.80	+0.2
3,167,598	-	nrdF	LU632_RS16815	0.80	+0.5
3,167,598	-	nrdF	LU632_RS16815	0.80	+1.6
3,167,598	-	nrdF	LU632_RS16815	0.80	+0.9
3,167,606	+	nrdF	LU632_RS16815	0.81	-1.3
3,167,653	+	nrdF	LU632_RS16815	0.86	+2.2
3,167,759	-				-3.1
3,167,867	-				-0.2
3,167,950	-				+0.6
3,168,089	-				-0.0
3,168,157	+				+0.4
3,168,333	+	proV	LU632_RS16820	0.14	-0.2
3,168,450	+	proV	LU632_RS16820	0.24	+1.5
3,168,538	-	proV	LU632_RS16820	0.31	+1.2
3,168,564	-	proV	LU632_RS16820	0.33	+0.2
3,168,613	-	proV	LU632_RS16820	0.37	+0.3
3,168,613	-	proV	LU632_RS16820	0.37	-1.5
3,168,721	-	proV	LU632_RS16820	0.46	-0.8
3,168,721	-	proV	LU632_RS16820	0.46	-0.1
3,168,723	+	proV	LU632_RS16820	0.46	+0.1
3,168,723	+	proV	LU632_RS16820	0.46	-0.7
3,168,723	+	proV	LU632_RS16820	0.46	+0.0
3,168,723	+	proV	LU632_RS16820	0.46	-1.7
3,168,822	+	proV	LU632_RS16820	0.55	+0.1
3,168,823	-	proV	LU632_RS16820	0.55	-0.7
3,168,856	+	proV	LU632_RS16820	0.57	+2.6
3,168,871	-	proV	LU632_RS16820	0.59	+1.2
3,168,944	+	proV	LU632_RS16820	0.65	-0.5
3,168,949	-	proV	LU632_RS16820	0.65	+0.5
3,168,949	-	proV	LU632_RS16820	0.65	+2.7
3,168,952	+	proV	LU632_RS16820	0.65	-0.2
3,168,953	-	proV	LU632_RS16820	0.66	+0.4
3,168,953	-	proV	LU632_RS16820	0.66	+0.0
3,168,970	-	proV	LU632_RS16820	0.67	-0.5
3,168,973	+	proV	LU632_RS16820	0.67	+1.3
3,169,001	-	proV	LU632_RS16820	0.69	+0.7
3,169,034	-	proV	LU632_RS16820	0.72	-0.1
3,169,298	+				-0.3
3,169,299	-				+0.3
3,169,299	-				-0.4
3,169,299	-				+2.8
3,169,300	+				-0.6
3,169,301	-				-0.3
3,169,301	-				-1.2
3,169,315	+				+2.2
3,169,327	-				-0.4
3,169,330	-				-1.0
3,169,330	-				-1.0
3,169,330	-				-0.2
3,169,338	+				-1.4
3,169,610	+	proW	LU632_RS16825	0.22	+0.2
3,169,610	+	proW	LU632_RS16825	0.22	+0.1
3,169,614	-	proW	LU632_RS16825	0.22	-0.1
3,169,631	+	proW	LU632_RS16825	0.23	+0.2
3,169,731	+	proW	LU632_RS16825	0.32	-1.4
3,169,731	+	proW	LU632_RS16825	0.32	+2.4
3,169,731	+	proW	LU632_RS16825	0.32	-0.2
3,169,731	+	proW	LU632_RS16825	0.32	-0.2
3,169,732	-	proW	LU632_RS16825	0.32	+1.1
3,169,732	-	proW	LU632_RS16825	0.32	+0.5
3,169,804	+	proW	LU632_RS16825	0.38	-0.2
3,169,991	+	proW	LU632_RS16825	0.54	+1.0
3,169,991	+	proW	LU632_RS16825	0.54	-0.6
3,169,991	+	proW	LU632_RS16825	0.54	-3.4
3,169,991	+	proW	LU632_RS16825	0.54	+2.3
3,169,991	+	proW	LU632_RS16825	0.54	-1.3
3,169,992	-	proW	LU632_RS16825	0.54	-0.9
3,169,992	-	proW	LU632_RS16825	0.54	+0.5
3,170,096	-	proW	LU632_RS16825	0.63	+0.6
3,170,102	+	proW	LU632_RS16825	0.64	-1.6
3,170,103	-	proW	LU632_RS16825	0.64	-0.1
3,170,103	-	proW	LU632_RS16825	0.64	-0.7
3,170,122	+	proW	LU632_RS16825	0.66	-0.9
3,170,122	+	proW	LU632_RS16825	0.66	+1.0
3,170,126	-	proW	LU632_RS16825	0.66	-0.6
3,170,126	-	proW	LU632_RS16825	0.66	-0.3
3,170,144	+	proW	LU632_RS16825	0.67	+0.6
3,170,148	-	proW	LU632_RS16825	0.68	+0.3
3,170,261	+	proW	LU632_RS16825	0.77	+0.1