Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16605

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,138,532	+				-0.9
3,138,534	+				+1.9
3,138,544	+				-0.1
3,138,676	-				+1.6
3,138,676	-				+1.2
3,138,787	+		LU632_RS16600	0.28	-0.4
3,138,840	-		LU632_RS16600	0.39	+0.1
3,138,854	-		LU632_RS16600	0.41	-0.0
3,138,965	+		LU632_RS16600	0.64	+4.1
3,139,005	+		LU632_RS16600	0.72	+0.5
3,139,005	+		LU632_RS16600	0.72	-0.0
3,139,008	+		LU632_RS16600	0.73	+0.4
3,139,184	-				-0.8
3,139,216	+				-0.8
3,139,216	+				+1.3
3,139,221	-				+0.2
3,139,342	+				-0.1
3,139,343	-				-1.5
3,139,343	-				-0.8
3,139,386	-				+0.3
3,139,410	+		LU632_RS16605	0.20	-0.2
3,139,427	-		LU632_RS16605	0.30	-2.1
3,139,628	+				+2.2
3,139,628	+				+1.2
3,139,629	-				+0.4
3,139,629	-				-2.9
3,139,630	+				+0.2
3,139,681	-				-0.6
3,139,754	+				-0.6
3,139,770	+				-1.3
3,139,840	-				-1.8
3,139,840	-				-2.3
3,139,840	-				-1.3
3,139,942	-				-2.3
3,139,965	-				-0.1
3,140,018	-		LU632_RS16610	0.15	-0.6
3,140,020	+		LU632_RS16610	0.16	+0.1
3,140,195	+		LU632_RS16610	0.34	+1.3
3,140,416	+		LU632_RS16610	0.57	-0.7
3,140,417	-		LU632_RS16610	0.57	-1.8
3,140,422	+		LU632_RS16610	0.57	-2.2
3,140,425	+		LU632_RS16610	0.58	+1.2
3,140,425	+		LU632_RS16610	0.58	-1.9
3,140,537	+		LU632_RS16610	0.69	-1.1
3,140,538	-		LU632_RS16610	0.69	-0.1
3,140,541	-		LU632_RS16610	0.70	-1.2
3,140,541	-		LU632_RS16610	0.70	+2.2
3,140,541	-		LU632_RS16610	0.70	-0.8
3,140,541	-		LU632_RS16610	0.70	+0.2
3,140,541	-		LU632_RS16610	0.70	+1.0
3,140,541	-		LU632_RS16610	0.70	-1.0
3,140,543	+		LU632_RS16610	0.70	+0.3
3,140,544	-		LU632_RS16610	0.70	+0.6