Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16525

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,130,991	-				+1.0
3,131,036	+				-2.7
3,131,037	-				-1.4
3,131,085	-				-1.0
3,131,105	+				+1.1
3,131,105	+				+0.5
3,131,105	+				+0.2
3,131,106	-				+0.8
3,131,107	+				+0.3
3,131,107	+				+0.8
3,131,107	+				-2.9
3,131,107	+				+0.2
3,131,108	-				+0.0
3,131,126	-				+2.6
3,131,126	-				+1.7
3,131,166	+		LU632_RS16520	0.15	+0.1
3,131,207	-		LU632_RS16520	0.26	+0.5
3,131,306	+		LU632_RS16520	0.53	+1.2
3,131,306	+		LU632_RS16520	0.53	+0.5
3,131,306	+		LU632_RS16520	0.53	+1.5
3,131,307	-		LU632_RS16520	0.53	-0.8
3,131,438	-		LU632_RS16520	0.88	+2.2
3,131,478	+				+0.4
3,131,480	+				-0.3
3,131,481	-				+1.2
3,131,499	+				+1.3
3,131,499	+				+1.7
3,131,499	+				-1.8
3,131,500	-				+0.4
3,131,569	+				+0.9
3,131,569	+				-0.4
3,131,570	-				-0.4
3,131,570	-				+0.4
3,131,570	-				-1.0
3,131,572	-				-0.1
3,131,603	-				+0.3
3,131,613	+				+2.0
3,131,613	+				+0.0
3,131,613	+				+2.0
3,131,613	+				+1.5
3,131,614	-				-0.6
3,131,614	-				+1.2
3,131,614	-				-2.8
3,131,759	+		LU632_RS16525	0.13	-0.6
3,131,760	-		LU632_RS16525	0.13	-2.9
3,131,760	-		LU632_RS16525	0.13	-1.3
3,131,761	+		LU632_RS16525	0.13	+1.0
3,131,865	-		LU632_RS16525	0.22	-1.3
3,132,044	+		LU632_RS16525	0.38	+0.2
3,132,045	-		LU632_RS16525	0.38	+1.2
3,132,070	-		LU632_RS16525	0.40	-1.0
3,132,081	+		LU632_RS16525	0.41	-1.8
3,132,081	+		LU632_RS16525	0.41	+0.4
3,132,235	-		LU632_RS16525	0.54	+0.8
3,132,279	+		LU632_RS16525	0.58	+0.9
3,132,347	+		LU632_RS16525	0.64	-2.2
3,132,348	-		LU632_RS16525	0.64	-1.8
3,132,485	+		LU632_RS16525	0.76	+0.2
3,132,701	-				-2.0
3,132,723	+				-3.4
3,132,723	+				+1.6
3,132,723	+				-0.7
3,132,724	-				-1.1
3,132,759	+				-3.6
3,132,785	+				+1.4
3,132,804	+				+0.0
3,132,978	+		LU632_RS16530	0.48	+0.9
3,132,978	+		LU632_RS16530	0.48	+1.1
3,132,979	-		LU632_RS16530	0.49	+1.4
3,132,984	-		LU632_RS16530	0.52	-1.8
3,133,042	+		LU632_RS16530	0.89	-3.5
3,133,042	+		LU632_RS16530	0.89	-0.3
3,133,042	+		LU632_RS16530	0.89	-0.8
3,133,042	+		LU632_RS16530	0.89	+0.0
3,133,042	+		LU632_RS16530	0.89	-0.0
3,133,043	-				+2.6
3,133,043	-				+1.5
3,133,043	-				-2.6
3,133,046	+				+0.4
3,133,046	+				+0.7
3,133,046	+				-0.3
3,133,047	-				+0.1
3,133,057	-				+0.1
3,133,126	+				-2.6
3,133,157	+				-1.4
3,133,187	+				-0.7
3,133,188	-				-0.9
3,133,192	+				+1.8
3,133,196	+				-0.2
3,133,199	+		LU632_RS16535	0.11	+2.2
3,133,215	+		LU632_RS16535	0.18	+0.9
3,133,216	-		LU632_RS16535	0.19	-2.1
3,133,263	+		LU632_RS16535	0.40	-2.3
3,133,263	+		LU632_RS16535	0.40	+1.1
3,133,263	+		LU632_RS16535	0.40	+1.2
3,133,366	-		LU632_RS16535	0.87	+0.4
3,133,366	-		LU632_RS16535	0.87	+0.9
3,133,366	-		LU632_RS16535	0.87	+0.2
3,133,366	-		LU632_RS16535	0.87	+0.9
3,133,499	+		LU632_RS16540	0.35	-0.3
3,133,499	+		LU632_RS16540	0.35	-0.2
3,133,500	-		LU632_RS16540	0.35	+0.3
3,133,648	+				-0.4
3,133,648	+				-0.1