Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16440

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,110,898	+				+1.0
3,110,926	-				-0.7
3,110,942	-				+1.3
3,110,942	-				-0.5
3,110,959	+				+1.8
3,110,991	-				-0.3
3,110,994	+				-2.1
3,111,436	-				-1.4
3,111,455	+				+0.1
3,111,487	+				-0.3
3,111,532	+				-2.5
3,111,609	-	pagP	LU632_RS16445	0.21	-0.8
3,111,616	+	pagP	LU632_RS16445	0.23	-2.7
3,111,616	+	pagP	LU632_RS16445	0.23	-0.6
3,111,617	-	pagP	LU632_RS16445	0.23	-1.0
3,111,617	-	pagP	LU632_RS16445	0.23	+0.5
3,111,720	-	pagP	LU632_RS16445	0.41	-0.4
3,111,734	+	pagP	LU632_RS16445	0.43	-0.4
3,111,735	-	pagP	LU632_RS16445	0.43	-0.4
3,111,764	-	pagP	LU632_RS16445	0.48	-0.6
3,111,860	-	pagP	LU632_RS16445	0.65	-2.0
3,111,872	+	pagP	LU632_RS16445	0.67	-1.4
3,111,873	-	pagP	LU632_RS16445	0.67	-1.8
3,111,881	+	pagP	LU632_RS16445	0.69	-3.2
3,111,881	+	pagP	LU632_RS16445	0.69	+0.8
3,111,926	+	pagP	LU632_RS16445	0.76	+1.2
3,111,926	+	pagP	LU632_RS16445	0.76	+0.6
3,111,968	+	pagP	LU632_RS16445	0.84	-0.5
3,111,968	+	pagP	LU632_RS16445	0.84	+1.2
3,111,969	-	pagP	LU632_RS16445	0.84	-2.1
3,111,969	-	pagP	LU632_RS16445	0.84	-1.6
3,112,005	-				-0.8
3,112,067	+				-1.7