Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16235

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,070,462	-				-1.2
3,070,705	-				+0.2
3,070,760	+				+0.3
3,070,761	+				-2.3
3,070,830	+				-2.0
3,070,831	-				+0.4
3,070,831	-				-0.1
3,070,831	-				-3.6
3,070,841	+				-2.3
3,070,854	+				-2.0
3,070,886	+				-0.8
3,070,934	+				+2.3
3,070,951	+				-0.5
3,070,951	+				+1.9
3,070,951	+				-1.9
3,070,979	+				+0.6
3,070,979	+				+0.3
3,070,980	-				+3.1
3,071,025	-				+1.6
3,071,030	+				+0.3
3,071,080	-				-1.3
3,071,145	-				-0.8
3,071,267	-				-0.2
3,072,919	-				+1.5
3,072,934	-				-0.1
3,073,196	+				+3.8
3,073,264	-				+0.3
3,073,264	-				-1.0
3,073,273	+				-0.2
3,073,273	+				-1.0
3,073,390	-	nagE	LU632_RS16240	0.10	-0.1
3,073,390	-	nagE	LU632_RS16240	0.10	+0.5
3,073,533	+	nagE	LU632_RS16240	0.17	+1.0
3,073,534	-	nagE	LU632_RS16240	0.17	+0.9
3,073,534	-	nagE	LU632_RS16240	0.17	+0.5
3,073,890	+	nagE	LU632_RS16240	0.35	+1.0
3,073,891	-	nagE	LU632_RS16240	0.35	+0.6
3,073,891	-	nagE	LU632_RS16240	0.35	-0.4
3,073,891	-	nagE	LU632_RS16240	0.35	-0.1