Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16215

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
3,064,305	-				-0.1
3,064,384	+				+1.5
3,064,385	-				-1.4
3,064,489	-				-0.8
3,064,521	+				-0.4
3,064,521	+				+0.3
3,064,522	-				+0.8
3,064,540	+				-1.3
3,064,541	-				-1.8
3,064,544	+				+0.6
3,064,545	-				+0.4
3,064,692	-				+0.4
3,064,706	-				-0.7
3,064,706	-				+0.5
3,064,808	+				+0.5
3,064,808	+				+0.3
3,064,808	+				-0.3
3,064,808	+				-0.2
3,064,812	-				-1.0
3,064,882	+				-0.9
3,064,882	+				-1.0
3,064,882	+				+2.2
3,064,883	-				+1.9
3,064,883	-				+0.6
3,064,888	+				+0.9
3,064,888	+				-2.2
3,065,090	-		LU632_RS16210	0.87	+2.0
3,065,125	+				+1.1
3,065,126	+				-1.5
3,065,127	-				-0.5
3,065,130	+				+0.6
3,065,159	+				-0.1
3,065,182	+				-1.1
3,065,196	+				+0.9
3,065,197	-				-0.9
3,065,197	-				-2.9
3,065,259	-				-2.6
3,065,329	-		LU632_RS16215	0.14	-0.3
3,065,372	-		LU632_RS16215	0.21	-2.9
3,065,402	+		LU632_RS16215	0.27	-0.0
3,065,451	+		LU632_RS16215	0.36	+0.1
3,065,488	-		LU632_RS16215	0.42	+1.2
3,065,610	-		LU632_RS16215	0.64	+0.4
3,065,632	-		LU632_RS16215	0.68	-0.7
3,065,656	-		LU632_RS16215	0.73	+0.0
3,065,730	-		LU632_RS16215	0.86	+0.8
3,065,733	+		LU632_RS16215	0.86	-0.6
3,065,734	-		LU632_RS16215	0.87	+1.7
3,065,847	+				+1.8
3,065,847	+				+0.6
3,065,847	+				-0.4
3,065,848	-				+1.3
3,065,931	+				-0.6
3,066,077	+		LU632_RS16220	0.11	+0.1
3,066,078	-		LU632_RS16220	0.11	+0.2
3,066,097	-		LU632_RS16220	0.12	+0.9
3,066,185	+		LU632_RS16220	0.16	-3.2
3,066,186	-		LU632_RS16220	0.16	+0.1
3,066,186	-		LU632_RS16220	0.16	+0.3
3,066,186	-		LU632_RS16220	0.16	+0.1
3,066,186	-		LU632_RS16220	0.16	+1.7
3,066,286	-		LU632_RS16220	0.19	-1.1
3,066,380	+		LU632_RS16220	0.23	+1.1
3,066,423	+		LU632_RS16220	0.24	+0.2
3,066,425	+		LU632_RS16220	0.25	-2.1
3,066,426	-		LU632_RS16220	0.25	-0.8
3,066,426	-		LU632_RS16220	0.25	-1.0
3,066,426	-		LU632_RS16220	0.25	+0.8
3,066,426	-		LU632_RS16220	0.25	+2.2
3,066,426	-		LU632_RS16220	0.25	+0.8
3,066,432	-		LU632_RS16220	0.25	-0.9
3,066,458	+		LU632_RS16220	0.26	-1.1
3,066,547	+		LU632_RS16220	0.29	+2.8
3,066,548	-		LU632_RS16220	0.29	-0.6
3,066,548	-		LU632_RS16220	0.29	+1.5
3,066,645	-		LU632_RS16220	0.33	-0.0
3,066,670	+		LU632_RS16220	0.34	+0.3
3,066,738	+		LU632_RS16220	0.36	-0.6
3,066,769	-		LU632_RS16220	0.38	+2.2