Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16040

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolA and tolR are separated by 29 nucleotidestolR and tolQ are separated by 8 nucleotidestolQ and ybgC overlap by 4 nucleotides LU632_RS16035: tolA - cell envelope integrity protein TolA, at 3,030,071 to 3,031,222 tolA LU632_RS16040: tolR - colicin uptake protein TolR, at 3,031,252 to 3,031,680 tolR LU632_RS16045: tolQ - Tol-Pal system protein TolQ, at 3,031,689 to 3,032,372 tolQ LU632_RS16050: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 3,032,369 to 3,032,773 ybgC Position (kb) 3031 3032Strain fitness (log2 ratio) -2 -1 0 1 2at 3031.249 kb on - strandat 3032.483 kb on - strand, within ybgCat 3032.487 kb on - strand, within ybgCat 3032.489 kb on - strand, within ybgCat 3032.489 kb on - strand, within ybgCat 3032.525 kb on - strand, within ybgCat 3032.525 kb on - strand, within ybgCat 3032.525 kb on - strand, within ybgCat 3032.666 kb on - strand, within ybgC

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
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3,031,249 - -1.4
3,032,483 - ybgC LU632_RS16050 0.28 +0.1
3,032,487 - ybgC LU632_RS16050 0.29 +0.0
3,032,489 - ybgC LU632_RS16050 0.30 +0.7
3,032,489 - ybgC LU632_RS16050 0.30 +1.8
3,032,525 - ybgC LU632_RS16050 0.39 -0.1
3,032,525 - ybgC LU632_RS16050 0.39 +1.6
3,032,525 - ybgC LU632_RS16050 0.39 -2.4
3,032,666 - ybgC LU632_RS16050 0.73 -1.6

Or see this region's nucleotide sequence