Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14775

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,807,453	+	lpoB	LU632_RS14765	0.18	-0.2
2,807,453	+	lpoB	LU632_RS14765	0.18	-1.6
2,807,457	-	lpoB	LU632_RS14765	0.19	-2.7
2,807,457	-	lpoB	LU632_RS14765	0.19	+1.1
2,807,458	+	lpoB	LU632_RS14765	0.19	+1.0
2,807,467	+	lpoB	LU632_RS14765	0.20	-1.0
2,807,655	-	lpoB	LU632_RS14765	0.53	+0.2
2,807,655	-	lpoB	LU632_RS14765	0.53	-1.2
2,807,784	+	lpoB	LU632_RS14765	0.76	+0.6
2,807,934	-				-0.4
2,807,934	-				+0.5
2,807,961	+				-0.8
2,807,967	+				-0.2
2,807,986	+				-0.7
2,807,986	+				-0.5
2,807,987	-				-0.7
2,807,987	-				+0.3
2,808,096	+		LU632_RS14770	0.39	+3.9
2,808,097	-		LU632_RS14770	0.39	+0.1
2,808,112	-		LU632_RS14770	0.44	-0.6
2,808,116	-		LU632_RS14770	0.45	-0.4
2,808,208	+		LU632_RS14770	0.71	-1.3
2,808,209	-		LU632_RS14770	0.72	-0.8
2,808,209	-		LU632_RS14770	0.72	-0.4
2,808,209	-		LU632_RS14770	0.72	+2.8
2,808,209	-		LU632_RS14770	0.72	+1.8
2,808,263	-		LU632_RS14770	0.87	+1.9
2,808,320	+				+1.4
2,808,351	+				-0.0
2,808,449	+	hinT	LU632_RS14775	0.26	-0.4
2,808,573	-	hinT	LU632_RS14775	0.62	+0.2
2,808,653	+	hinT	LU632_RS14775	0.84	+0.7
2,808,654	-	hinT	LU632_RS14775	0.85	-0.6
2,808,678	-				-0.9
2,808,683	+				+0.6
2,808,831	+				+3.8
2,808,831	+				+0.4
2,808,832	-				-2.1
2,808,900	-				+0.0
2,808,914	+				-0.3
2,808,914	+				+0.4
2,808,914	+				+0.1
2,808,915	-				-3.4
2,808,924	+				-0.2
2,809,098	+	ptsG	LU632_RS14780	0.14	-0.8
2,809,189	-	ptsG	LU632_RS14780	0.20	+0.4
2,809,207	+	ptsG	LU632_RS14780	0.22	-1.7
2,809,208	-	ptsG	LU632_RS14780	0.22	+0.3
2,809,226	+	ptsG	LU632_RS14780	0.23	+0.1
2,809,292	-	ptsG	LU632_RS14780	0.27	-0.5
2,809,292	-	ptsG	LU632_RS14780	0.27	-3.4
2,809,354	-	ptsG	LU632_RS14780	0.32	+1.0
2,809,419	+	ptsG	LU632_RS14780	0.36	+1.8
2,809,420	-	ptsG	LU632_RS14780	0.36	-2.0
2,809,529	-	ptsG	LU632_RS14780	0.44	+2.1
2,809,529	-	ptsG	LU632_RS14780	0.44	-0.8
2,809,530	+	ptsG	LU632_RS14780	0.44	+2.8
2,809,530	+	ptsG	LU632_RS14780	0.44	-1.2
2,809,530	+	ptsG	LU632_RS14780	0.44	+0.1
2,809,531	-	ptsG	LU632_RS14780	0.44	-2.0
2,809,531	-	ptsG	LU632_RS14780	0.44	-0.6
2,809,556	+	ptsG	LU632_RS14780	0.46	-0.9
2,809,588	-	ptsG	LU632_RS14780	0.48	-1.2
2,809,613	+	ptsG	LU632_RS14780	0.50	+1.3
2,809,613	+	ptsG	LU632_RS14780	0.50	-0.7
2,809,656	+	ptsG	LU632_RS14780	0.53	+2.1
2,809,695	+	ptsG	LU632_RS14780	0.56	-0.1