Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14630

Experiment: Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem (TE-S-C5-MS)
2,781,721	-		LU632_RS14620	0.86	+0.4
2,781,777	+				+0.9
2,781,777	+				-0.1
2,781,777	+				+2.1
2,781,777	+				-0.6
2,781,777	+				+1.8
2,781,777	+				+0.7
2,781,778	-				+1.6
2,781,778	-				-0.3
2,781,778	-				-0.8
2,781,779	+				+2.1
2,781,814	+				-1.5
2,781,837	-				-0.5
2,781,908	+				-1.4
2,781,923	-		LU632_RS14625	0.10	+1.2
2,782,197	+		LU632_RS14625	0.44	-0.5
2,782,198	-		LU632_RS14625	0.44	-0.9
2,782,391	-		LU632_RS14625	0.68	-1.7
2,782,405	+		LU632_RS14625	0.70	+2.1
2,782,446	+		LU632_RS14625	0.75	+1.0
2,782,446	+		LU632_RS14625	0.75	-1.3
2,782,446	+		LU632_RS14625	0.75	+1.3
2,782,493	+		LU632_RS14625	0.80	-0.9
2,782,493	+		LU632_RS14625	0.80	+0.8
2,782,494	-		LU632_RS14625	0.80	+0.2
2,782,582	+				-0.2
2,782,583	-				-0.6
2,782,588	-				-0.1
2,782,684	-				-1.1
2,782,689	+				+0.3
2,782,689	+				-1.5
2,782,689	+				-1.6
2,782,689	+				-1.7
2,782,689	+				-0.2
2,782,690	-				+0.6
2,782,690	-				-2.4
2,782,690	-				-0.8
2,782,690	-				-0.2
2,782,690	-				+0.1
2,782,692	-				+2.4
2,782,696	+				-2.7
2,782,762	+		LU632_RS14630	0.12	+0.4
2,783,015	+		LU632_RS14630	0.41	-1.4
2,783,054	+		LU632_RS14630	0.46	+0.2
2,783,054	+		LU632_RS14630	0.46	+0.9
2,783,098	+		LU632_RS14630	0.51	+2.8
2,783,098	+		LU632_RS14630	0.51	+0.3
2,783,287	-		LU632_RS14630	0.73	-1.6
2,783,333	-		LU632_RS14630	0.78	-1.2
2,783,336	-		LU632_RS14630	0.78	+0.1
2,783,336	-		LU632_RS14630	0.78	-0.3
2,783,486	+				-1.2
2,783,486	+				+1.7
2,783,486	+				-1.4
2,783,487	-				-0.2
2,783,487	-				-0.9
2,783,488	+				-2.0
2,783,488	+				-2.4
2,783,488	+				+0.2
2,783,488	+				-0.3
2,783,488	+				-0.5
2,783,488	+				+0.1
2,783,488	+				-0.7
2,783,488	+				-2.7
2,783,489	-				+0.8
2,783,489	-				-0.5
2,783,489	-				-0.1
2,783,489	-				-0.6
2,783,490	+				+0.8
2,783,490	+				+3.9
2,783,490	+				+0.2
2,783,490	+				+0.1
2,783,490	+				+2.2
2,783,490	+				+0.1
2,783,490	+				+1.3
2,783,490	+				-0.7
2,783,634	+		LU632_RS14635	0.13	+2.4
2,783,699	+		LU632_RS14635	0.21	-1.1
2,783,699	+		LU632_RS14635	0.21	+0.5
2,783,700	-		LU632_RS14635	0.21	+0.9
2,783,701	+		LU632_RS14635	0.21	-0.3
2,783,701	+		LU632_RS14635	0.21	+0.4
2,783,702	-		LU632_RS14635	0.21	+0.9
2,784,036	+		LU632_RS14635	0.60	+3.2
2,784,036	+		LU632_RS14635	0.60	-1.5
2,784,036	+		LU632_RS14635	0.60	-0.5
2,784,037	-		LU632_RS14635	0.60	-0.5
2,784,041	-		LU632_RS14635	0.60	-0.0
2,784,117	+		LU632_RS14635	0.69	-1.2
2,784,117	+		LU632_RS14635	0.69	+0.4
2,784,117	+		LU632_RS14635	0.69	-0.6
2,784,117	+		LU632_RS14635	0.69	-1.7
2,784,283	-		LU632_RS14635	0.88	+0.5
2,784,346	+				+2.8
2,784,347	-				-0.9
2,784,416	+				+1.4
2,784,416	+				-0.8
2,784,416	+				+1.2
2,784,416	+				+3.0
2,784,434	+				+1.0
2,784,435	-				-2.5
2,784,435	-				-2.8